Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18460 | 5' | -57.2 | NC_004681.1 | + | 17667 | 0.66 | 0.686927 |
Target: 5'- gGCCGCGGCGucACuGCCCcaguugaaggggguGCCgCCAGg -3' miRNA: 3'- gCGGUGCUGCuuUG-CGGG--------------UGGaGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 25290 | 0.66 | 0.668929 |
Target: 5'- uCGCC-CGAUGAGACGaCuCCGCCUgagCCu- -3' miRNA: 3'- -GCGGuGCUGCUUUGC-G-GGUGGA---GGuu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 5777 | 0.66 | 0.668929 |
Target: 5'- aCGCCaccGCGGCGAuguggaagAACGCUgGCCgccCCAAc -3' miRNA: 3'- -GCGG---UGCUGCU--------UUGCGGgUGGa--GGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 63150 | 0.66 | 0.711041 |
Target: 5'- gGUCuGCGACGAcuCGCCC-CUUCCc- -3' miRNA: 3'- gCGG-UGCUGCUuuGCGGGuGGAGGuu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 40981 | 0.66 | 0.678472 |
Target: 5'- aG-CGCGGCGAAGCagguuaaGCCCACCUUg-- -3' miRNA: 3'- gCgGUGCUGCUUUG-------CGGGUGGAGguu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 29682 | 0.66 | 0.69009 |
Target: 5'- gGCCAgcACGuuGcCGCCCACCUCg-- -3' miRNA: 3'- gCGGUgcUGCuuU-GCGGGUGGAGguu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 40561 | 0.66 | 0.685872 |
Target: 5'- gGCCGCGGCGuucaaugucauCGgCCGCCUCa-- -3' miRNA: 3'- gCGGUGCUGCuuu--------GCgGGUGGAGguu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 68560 | 0.66 | 0.711041 |
Target: 5'- uCGUCACGACGAGGucaGCCUucuucggcaGCCUCa-- -3' miRNA: 3'- -GCGGUGCUGCUUUg--CGGG---------UGGAGguu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 43873 | 0.66 | 0.700597 |
Target: 5'- gGUCACGACucGcCGCCCugCUCgGu -3' miRNA: 3'- gCGGUGCUGcuUuGCGGGugGAGgUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 44998 | 0.66 | 0.711041 |
Target: 5'- gGCCuCGugGGcguCGCCCGCUUCg-- -3' miRNA: 3'- gCGGuGCugCUuu-GCGGGUGGAGguu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 34345 | 0.66 | 0.6985 |
Target: 5'- aCGCCGCGGCGGcgugaggguuguGCGCgcugcggaaauCCACCcCCAGa -3' miRNA: 3'- -GCGGUGCUGCUu-----------UGCG-----------GGUGGaGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 47110 | 0.66 | 0.668929 |
Target: 5'- cCGCCgcugaGCGACGAGaACGCCgaggGCCgcgCCGAa -3' miRNA: 3'- -GCGG-----UGCUGCUU-UGCGGg---UGGa--GGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 34782 | 0.66 | 0.711041 |
Target: 5'- gCGCCGaaGCGAGAC-CCCGaacaaCUCCAGg -3' miRNA: 3'- -GCGGUgcUGCUUUGcGGGUg----GAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 45674 | 0.66 | 0.658295 |
Target: 5'- gGCCACcuuGCGGgcGAUGUCCACCugcUCCAGg -3' miRNA: 3'- gCGGUGc--UGCU--UUGCGGGUGG---AGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 2873 | 0.66 | 0.711041 |
Target: 5'- uCGaCCGUGACGAAGC-CCC-CCUCCc- -3' miRNA: 3'- -GC-GGUGCUGCUUUGcGGGuGGAGGuu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 48500 | 0.66 | 0.700597 |
Target: 5'- uCGCCGCGgagaacccggaGCGGGugGCgCACUgCCAAu -3' miRNA: 3'- -GCGGUGC-----------UGCUUugCGgGUGGaGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 69114 | 0.66 | 0.700597 |
Target: 5'- gCGCCGCcuCGcccGCGCCCugGCCUCCc- -3' miRNA: 3'- -GCGGUGcuGCuu-UGCGGG--UGGAGGuu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 20263 | 0.66 | 0.679531 |
Target: 5'- uCGCCACGAacaacAACGuCCCGCCgcUCCu- -3' miRNA: 3'- -GCGGUGCUgcu--UUGC-GGGUGG--AGGuu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 46587 | 0.67 | 0.626294 |
Target: 5'- uGCC-UGACGAAGCccagaccgGCCCACUcgCCGAg -3' miRNA: 3'- gCGGuGCUGCUUUG--------CGGGUGGa-GGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 5826 | 0.67 | 0.626294 |
Target: 5'- gCGgCACGA-GAAGCGCCUcaGCC-CCGAg -3' miRNA: 3'- -GCgGUGCUgCUUUGCGGG--UGGaGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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