Results 61 - 77 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18460 | 5' | -57.2 | NC_004681.1 | + | 16377 | 0.7 | 0.432852 |
Target: 5'- gCGCCAaGugGGuugccuCGgCCACCUCCAAg -3' miRNA: 3'- -GCGGUgCugCUuu----GCgGGUGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 52556 | 0.71 | 0.405392 |
Target: 5'- aCGCUAUcgcgGACGAGugGUCC-CCUCCGu -3' miRNA: 3'- -GCGGUG----CUGCUUugCGGGuGGAGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 41751 | 0.71 | 0.396485 |
Target: 5'- aCGaCCGCGACGGGAaccuccUGCaCGCCUCCAGg -3' miRNA: 3'- -GC-GGUGCUGCUUU------GCGgGUGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 71258 | 0.71 | 0.387706 |
Target: 5'- aGCCAgCGugGAAAuUGCCCGaCUCCAGu -3' miRNA: 3'- gCGGU-GCugCUUU-GCGGGUgGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 41113 | 0.72 | 0.345769 |
Target: 5'- uGCCGCGAUGGAuggcaaGCCCACCauugaggacgUCCAc -3' miRNA: 3'- gCGGUGCUGCUUug----CGGGUGG----------AGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 33306 | 0.73 | 0.306449 |
Target: 5'- gCGCCGCGGuguacgcCGGGACGUUCGCCgUCCAGg -3' miRNA: 3'- -GCGGUGCU-------GCUUUGCGGGUGG-AGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 52268 | 0.73 | 0.322212 |
Target: 5'- gGCCGCGACGcGGACGUUguCCUCCu- -3' miRNA: 3'- gCGGUGCUGC-UUUGCGGguGGAGGuu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 22818 | 0.73 | 0.307186 |
Target: 5'- uCGCCGgGGCGA--C-CCCGCCUCCGAu -3' miRNA: 3'- -GCGGUgCUGCUuuGcGGGUGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 14441 | 0.73 | 0.314631 |
Target: 5'- aCGCCGCccgcgaggcggaGGCGAAcgccgcGCGCgCCGCCUCCGc -3' miRNA: 3'- -GCGGUG------------CUGCUU------UGCG-GGUGGAGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 56533 | 0.73 | 0.285661 |
Target: 5'- gGUgACGAUGAccucGCgGCCCGCCUCCAAc -3' miRNA: 3'- gCGgUGCUGCUu---UG-CGGGUGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 7879 | 0.74 | 0.25246 |
Target: 5'- gCGCCcguCGAUGAGAcCGCcgCCGCCUCCGAg -3' miRNA: 3'- -GCGGu--GCUGCUUU-GCG--GGUGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 22385 | 0.76 | 0.19562 |
Target: 5'- gCGCCAUGACGGgcagGGCGCCCACgCcgCCAc -3' miRNA: 3'- -GCGGUGCUGCU----UUGCGGGUG-Ga-GGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 27910 | 0.76 | 0.19562 |
Target: 5'- gCGCCACcguuGGCGccgccGCGCCCAUCUCCAGa -3' miRNA: 3'- -GCGGUG----CUGCuu---UGCGGGUGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 7352 | 0.77 | 0.171621 |
Target: 5'- cCGCCGCGGCGAAGCcucccgccaaGCCCGCggCCGAg -3' miRNA: 3'- -GCGGUGCUGCUUUG----------CGGGUGgaGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 26222 | 0.8 | 0.105671 |
Target: 5'- cCGCCACGGCGGcGAUGCCCGCCcCCu- -3' miRNA: 3'- -GCGGUGCUGCU-UUGCGGGUGGaGGuu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 55186 | 0.82 | 0.077957 |
Target: 5'- uCGcCCGCGACGGAAUGCCCaucuaccccacaGCCUCCGAa -3' miRNA: 3'- -GC-GGUGCUGCUUUGCGGG------------UGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 41615 | 1.06 | 0.001437 |
Target: 5'- cCGCCACGACGAAACGCCCACCUCCAAg -3' miRNA: 3'- -GCGGUGCUGCUUUGCGGGUGGAGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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