Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18460 | 5' | -57.2 | NC_004681.1 | + | 31317 | 0.68 | 0.541768 |
Target: 5'- uCGCCugGugGucGCaGCCUACggCUCCAAu -3' miRNA: 3'- -GCGGugCugCuuUG-CGGGUG--GAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 39100 | 0.68 | 0.583731 |
Target: 5'- gGCCGuCGACGuuGACGCCUuCCUCg-- -3' miRNA: 3'- gCGGU-GCUGCu-UUGCGGGuGGAGguu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 7256 | 0.68 | 0.562645 |
Target: 5'- -uCCACGACGcgGcCGUCCACCUCg-- -3' miRNA: 3'- gcGGUGCUGCuuU-GCGGGUGGAGguu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 51427 | 0.68 | 0.541768 |
Target: 5'- aCGCCACGACGu-ACGCC-ACCaucgUCAAg -3' miRNA: 3'- -GCGGUGCUGCuuUGCGGgUGGa---GGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 18398 | 0.67 | 0.604969 |
Target: 5'- gGCCGCGGCGGcaAACGCCUucGCaC-CCGGa -3' miRNA: 3'- gCGGUGCUGCU--UUGCGGG--UG-GaGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 45402 | 0.67 | 0.604969 |
Target: 5'- gGCaGCGGUGAAGCGCucagcaacuucgCCGCCUCCAu -3' miRNA: 3'- gCGgUGCUGCUUUGCG------------GGUGGAGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 50659 | 0.67 | 0.604969 |
Target: 5'- gCGCU---GCGAGACGCCUACCgcaCCGGg -3' miRNA: 3'- -GCGGugcUGCUUUGCGGGUGGa--GGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 54273 | 0.67 | 0.604969 |
Target: 5'- cCGCCGaagaGGCGcugguccuCGCCCACCUCa-- -3' miRNA: 3'- -GCGGUg---CUGCuuu-----GCGGGUGGAGguu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 49337 | 0.67 | 0.61136 |
Target: 5'- cCGCCACGGCGGcgccgcgGGCGCUgaccacugggcgcaCACCUUCu- -3' miRNA: 3'- -GCGGUGCUGCU-------UUGCGG--------------GUGGAGGuu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 57068 | 0.67 | 0.647639 |
Target: 5'- aGUC-CGugGAcgaaGGCGUCUGCCUCCGc -3' miRNA: 3'- gCGGuGCugCU----UUGCGGGUGGAGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 5582 | 0.67 | 0.636968 |
Target: 5'- uCGCCguagauguccaGCGuCGAGGCGaCCCACUcCCAGa -3' miRNA: 3'- -GCGG-----------UGCuGCUUUGC-GGGUGGaGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 51638 | 0.67 | 0.636968 |
Target: 5'- aGCUugGGCGAugagcGCGUCgACCUCUu- -3' miRNA: 3'- gCGGugCUGCUu----UGCGGgUGGAGGuu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 47388 | 0.67 | 0.647639 |
Target: 5'- gCGCCACGGCGAcGCGgUCCugCgacgucgUCAAg -3' miRNA: 3'- -GCGGUGCUGCUuUGC-GGGugGa------GGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 7292 | 0.67 | 0.646572 |
Target: 5'- cCGCCuGCGACGAgcugcacgccagcGACGuUCCACCcCCGg -3' miRNA: 3'- -GCGG-UGCUGCU-------------UUGC-GGGUGGaGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 23357 | 0.67 | 0.636968 |
Target: 5'- gCGCC-CGAgGugGucaaccuccUGCCCGCCUCCAc -3' miRNA: 3'- -GCGGuGCUgCuuU---------GCGGGUGGAGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 46587 | 0.67 | 0.626294 |
Target: 5'- uGCC-UGACGAAGCccagaccgGCCCACUcgCCGAg -3' miRNA: 3'- gCGGuGCUGCUUUG--------CGGGUGGa-GGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 5826 | 0.67 | 0.626294 |
Target: 5'- gCGgCACGA-GAAGCGCCUcaGCC-CCGAg -3' miRNA: 3'- -GCgGUGCUgCUUUGCGGG--UGGaGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 31264 | 0.67 | 0.604969 |
Target: 5'- uGCCGCGAauc--UGCCCGCC-CCAGg -3' miRNA: 3'- gCGGUGCUgcuuuGCGGGUGGaGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 63796 | 0.67 | 0.626294 |
Target: 5'- gCGaCCAUGACGAGuccgcgGCGCaCCACUUgCAGg -3' miRNA: 3'- -GC-GGUGCUGCUU------UGCG-GGUGGAgGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 63150 | 0.66 | 0.711041 |
Target: 5'- gGUCuGCGACGAcuCGCCC-CUUCCc- -3' miRNA: 3'- gCGG-UGCUGCUuuGCGGGuGGAGGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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