miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18460 5' -57.2 NC_004681.1 + 41615 1.06 0.001437
Target:  5'- cCGCCACGACGAAACGCCCACCUCCAAg -3'
miRNA:   3'- -GCGGUGCUGCUUUGCGGGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 55186 0.82 0.077957
Target:  5'- uCGcCCGCGACGGAAUGCCCaucuaccccacaGCCUCCGAa -3'
miRNA:   3'- -GC-GGUGCUGCUUUGCGGG------------UGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 26222 0.8 0.105671
Target:  5'- cCGCCACGGCGGcGAUGCCCGCCcCCu- -3'
miRNA:   3'- -GCGGUGCUGCU-UUGCGGGUGGaGGuu -5'
18460 5' -57.2 NC_004681.1 + 7352 0.77 0.171621
Target:  5'- cCGCCGCGGCGAAGCcucccgccaaGCCCGCggCCGAg -3'
miRNA:   3'- -GCGGUGCUGCUUUG----------CGGGUGgaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 22385 0.76 0.19562
Target:  5'- gCGCCAUGACGGgcagGGCGCCCACgCcgCCAc -3'
miRNA:   3'- -GCGGUGCUGCU----UUGCGGGUG-Ga-GGUu -5'
18460 5' -57.2 NC_004681.1 + 27910 0.76 0.19562
Target:  5'- gCGCCACcguuGGCGccgccGCGCCCAUCUCCAGa -3'
miRNA:   3'- -GCGGUG----CUGCuu---UGCGGGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 7879 0.74 0.25246
Target:  5'- gCGCCcguCGAUGAGAcCGCcgCCGCCUCCGAg -3'
miRNA:   3'- -GCGGu--GCUGCUUU-GCG--GGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 56533 0.73 0.285661
Target:  5'- gGUgACGAUGAccucGCgGCCCGCCUCCAAc -3'
miRNA:   3'- gCGgUGCUGCUu---UG-CGGGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 33306 0.73 0.306449
Target:  5'- gCGCCGCGGuguacgcCGGGACGUUCGCCgUCCAGg -3'
miRNA:   3'- -GCGGUGCU-------GCUUUGCGGGUGG-AGGUU- -5'
18460 5' -57.2 NC_004681.1 + 22818 0.73 0.307186
Target:  5'- uCGCCGgGGCGA--C-CCCGCCUCCGAu -3'
miRNA:   3'- -GCGGUgCUGCUuuGcGGGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 14441 0.73 0.314631
Target:  5'- aCGCCGCccgcgaggcggaGGCGAAcgccgcGCGCgCCGCCUCCGc -3'
miRNA:   3'- -GCGGUG------------CUGCUU------UGCG-GGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 52268 0.73 0.322212
Target:  5'- gGCCGCGACGcGGACGUUguCCUCCu- -3'
miRNA:   3'- gCGGUGCUGC-UUUGCGGguGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 41113 0.72 0.345769
Target:  5'- uGCCGCGAUGGAuggcaaGCCCACCauugaggacgUCCAc -3'
miRNA:   3'- gCGGUGCUGCUUug----CGGGUGG----------AGGUu -5'
18460 5' -57.2 NC_004681.1 + 71258 0.71 0.387706
Target:  5'- aGCCAgCGugGAAAuUGCCCGaCUCCAGu -3'
miRNA:   3'- gCGGU-GCugCUUU-GCGGGUgGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 41751 0.71 0.396485
Target:  5'- aCGaCCGCGACGGGAaccuccUGCaCGCCUCCAGg -3'
miRNA:   3'- -GC-GGUGCUGCUUU------GCGgGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 52556 0.71 0.405392
Target:  5'- aCGCUAUcgcgGACGAGugGUCC-CCUCCGu -3'
miRNA:   3'- -GCGGUG----CUGCUUugCGGGuGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 44914 0.7 0.421737
Target:  5'- cCGCCcgucuCGAUGucguaggucuUGCCCACCUCCAGg -3'
miRNA:   3'- -GCGGu----GCUGCuuu-------GCGGGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 16377 0.7 0.432852
Target:  5'- gCGCCAaGugGGuugccuCGgCCACCUCCAAg -3'
miRNA:   3'- -GCGGUgCugCUuu----GCgGGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 41799 0.7 0.432852
Target:  5'- gCGCCGCaGugGaAGACGCC-GCCUCCc- -3'
miRNA:   3'- -GCGGUG-CugC-UUUGCGGgUGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 45161 0.7 0.441299
Target:  5'- uCGaCCGCGGCGGAugcuucgGCGUCCcCCUCUAGg -3'
miRNA:   3'- -GC-GGUGCUGCUU-------UGCGGGuGGAGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.