miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18460 5' -57.2 NC_004681.1 + 7292 0.67 0.646572
Target:  5'- cCGCCuGCGACGAgcugcacgccagcGACGuUCCACCcCCGg -3'
miRNA:   3'- -GCGG-UGCUGCU-------------UUGC-GGGUGGaGGUu -5'
18460 5' -57.2 NC_004681.1 + 51638 0.67 0.636968
Target:  5'- aGCUugGGCGAugagcGCGUCgACCUCUu- -3'
miRNA:   3'- gCGGugCUGCUu----UGCGGgUGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 23357 0.67 0.636968
Target:  5'- gCGCC-CGAgGugGucaaccuccUGCCCGCCUCCAc -3'
miRNA:   3'- -GCGGuGCUgCuuU---------GCGGGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 5582 0.67 0.636968
Target:  5'- uCGCCguagauguccaGCGuCGAGGCGaCCCACUcCCAGa -3'
miRNA:   3'- -GCGG-----------UGCuGCUUUGC-GGGUGGaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 63796 0.67 0.626294
Target:  5'- gCGaCCAUGACGAGuccgcgGCGCaCCACUUgCAGg -3'
miRNA:   3'- -GC-GGUGCUGCUU------UGCG-GGUGGAgGUU- -5'
18460 5' -57.2 NC_004681.1 + 5826 0.67 0.626294
Target:  5'- gCGgCACGA-GAAGCGCCUcaGCC-CCGAg -3'
miRNA:   3'- -GCgGUGCUgCUUUGCGGG--UGGaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 46587 0.67 0.626294
Target:  5'- uGCC-UGACGAAGCccagaccgGCCCACUcgCCGAg -3'
miRNA:   3'- gCGGuGCUGCUUUG--------CGGGUGGa-GGUU- -5'
18460 5' -57.2 NC_004681.1 + 49337 0.67 0.61136
Target:  5'- cCGCCACGGCGGcgccgcgGGCGCUgaccacugggcgcaCACCUUCu- -3'
miRNA:   3'- -GCGGUGCUGCU-------UUGCGG--------------GUGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 54273 0.67 0.604969
Target:  5'- cCGCCGaagaGGCGcugguccuCGCCCACCUCa-- -3'
miRNA:   3'- -GCGGUg---CUGCuuu-----GCGGGUGGAGguu -5'
18460 5' -57.2 NC_004681.1 + 31264 0.67 0.604969
Target:  5'- uGCCGCGAauc--UGCCCGCC-CCAGg -3'
miRNA:   3'- gCGGUGCUgcuuuGCGGGUGGaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 18398 0.67 0.604969
Target:  5'- gGCCGCGGCGGcaAACGCCUucGCaC-CCGGa -3'
miRNA:   3'- gCGGUGCUGCU--UUGCGGG--UG-GaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 45402 0.67 0.604969
Target:  5'- gGCaGCGGUGAAGCGCucagcaacuucgCCGCCUCCAu -3'
miRNA:   3'- gCGgUGCUGCUUUGCG------------GGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 50659 0.67 0.604969
Target:  5'- gCGCU---GCGAGACGCCUACCgcaCCGGg -3'
miRNA:   3'- -GCGGugcUGCUUUGCGGGUGGa--GGUU- -5'
18460 5' -57.2 NC_004681.1 + 39100 0.68 0.583731
Target:  5'- gGCCGuCGACGuuGACGCCUuCCUCg-- -3'
miRNA:   3'- gCGGU-GCUGCu-UUGCGGGuGGAGguu -5'
18460 5' -57.2 NC_004681.1 + 7256 0.68 0.562645
Target:  5'- -uCCACGACGcgGcCGUCCACCUCg-- -3'
miRNA:   3'- gcGGUGCUGCuuU-GCGGGUGGAGguu -5'
18460 5' -57.2 NC_004681.1 + 51500 0.68 0.562645
Target:  5'- cCGCCAgcuCGGCuacaccGACGCcaCCACCUCCGAa -3'
miRNA:   3'- -GCGGU---GCUGcu----UUGCG--GGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 38319 0.68 0.562645
Target:  5'- gCGCCGCcGCGGGACGUcuucggCCGCC-CCAu -3'
miRNA:   3'- -GCGGUGcUGCUUUGCG------GGUGGaGGUu -5'
18460 5' -57.2 NC_004681.1 + 43804 0.68 0.552177
Target:  5'- -uCCACGAgGuccGCGCCCACCcCCGc -3'
miRNA:   3'- gcGGUGCUgCuu-UGCGGGUGGaGGUu -5'
18460 5' -57.2 NC_004681.1 + 50965 0.68 0.549048
Target:  5'- uGCUugucgggguacucgGCGGCGAGGCGCUuCACCUCUu- -3'
miRNA:   3'- gCGG--------------UGCUGCUUUGCGG-GUGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 51427 0.68 0.541768
Target:  5'- aCGCCACGACGu-ACGCC-ACCaucgUCAAg -3'
miRNA:   3'- -GCGGUGCUGCuuUGCGGgUGGa---GGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.