miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18460 5' -57.2 NC_004681.1 + 51427 0.68 0.541768
Target:  5'- aCGCCACGACGu-ACGCC-ACCaucgUCAAg -3'
miRNA:   3'- -GCGGUGCUGCuuUGCGGgUGGa---GGUU- -5'
18460 5' -57.2 NC_004681.1 + 50845 0.69 0.521156
Target:  5'- uCGCCGaagaGGUGAAGCGCCuCGCCgCCGAg -3'
miRNA:   3'- -GCGGUg---CUGCUUUGCGG-GUGGaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 47954 0.69 0.521156
Target:  5'- uCGCCAUc-CGAucuACGCCUACUUCCGg -3'
miRNA:   3'- -GCGGUGcuGCUu--UGCGGGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 22276 0.69 0.521156
Target:  5'- gCGUgGCGGCGuGGGCGCCCugC-CCGu -3'
miRNA:   3'- -GCGgUGCUGC-UUUGCGGGugGaGGUu -5'
18460 5' -57.2 NC_004681.1 + 64876 0.69 0.510965
Target:  5'- gCGagACGAcCGGAAUGCCCACCgcCCGAa -3'
miRNA:   3'- -GCggUGCU-GCUUUGCGGGUGGa-GGUU- -5'
18460 5' -57.2 NC_004681.1 + 14573 0.69 0.50995
Target:  5'- gCGCCcugcuCGGCGGAggcggcgcgcgcgGCGUUCGCCUCCGc -3'
miRNA:   3'- -GCGGu----GCUGCUU-------------UGCGGGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 12468 0.69 0.500857
Target:  5'- gGCCACGAgCGGuuCGUaCACCUUCAAg -3'
miRNA:   3'- gCGGUGCU-GCUuuGCGgGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 23652 0.69 0.500857
Target:  5'- aGCCGgGugagcccauCGAGcuggccuccuacGCGCCCGCCUCCGc -3'
miRNA:   3'- gCGGUgCu--------GCUU------------UGCGGGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 30816 0.69 0.500857
Target:  5'- aCGCCACGGCcu-GgGCCUACCUgcCCGGa -3'
miRNA:   3'- -GCGGUGCUGcuuUgCGGGUGGA--GGUU- -5'
18460 5' -57.2 NC_004681.1 + 50453 0.69 0.490838
Target:  5'- -aCCACGuCGugggcGACGCCCACC-CCGAc -3'
miRNA:   3'- gcGGUGCuGCu----UUGCGGGUGGaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 37043 0.69 0.480914
Target:  5'- cCGCCGCGugGAGuCGCCUACUg---- -3'
miRNA:   3'- -GCGGUGCugCUUuGCGGGUGGagguu -5'
18460 5' -57.2 NC_004681.1 + 3133 0.69 0.480914
Target:  5'- gCGCCcaGCGGCu---CGCCCuCCUCCAGg -3'
miRNA:   3'- -GCGG--UGCUGcuuuGCGGGuGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 52891 0.7 0.471088
Target:  5'- aGCCcgGCGACGAAAuccaaauccUGCCCGaCUCCGAg -3'
miRNA:   3'- gCGG--UGCUGCUUU---------GCGGGUgGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 39132 0.7 0.471088
Target:  5'- cCGCCGCGACaAGGCGCUCAUCgugCUg- -3'
miRNA:   3'- -GCGGUGCUGcUUUGCGGGUGGa--GGuu -5'
18460 5' -57.2 NC_004681.1 + 56766 0.7 0.461365
Target:  5'- uGCCGCGGgGcGAgGCCCACCUgUAc -3'
miRNA:   3'- gCGGUGCUgCuUUgCGGGUGGAgGUu -5'
18460 5' -57.2 NC_004681.1 + 900 0.7 0.461365
Target:  5'- aGCCGCccu--GGCGUCCGCCUCCAu -3'
miRNA:   3'- gCGGUGcugcuUUGCGGGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 61449 0.7 0.442243
Target:  5'- cCGCaGCGACGGGccgaucuCGUCUACCUCCAc -3'
miRNA:   3'- -GCGgUGCUGCUUu------GCGGGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 45161 0.7 0.441299
Target:  5'- uCGaCCGCGGCGGAugcuucgGCGUCCcCCUCUAGg -3'
miRNA:   3'- -GC-GGUGCUGCUU-------UGCGGGuGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 16377 0.7 0.432852
Target:  5'- gCGCCAaGugGGuugccuCGgCCACCUCCAAg -3'
miRNA:   3'- -GCGGUgCugCUuu----GCgGGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 41799 0.7 0.432852
Target:  5'- gCGCCGCaGugGaAGACGCC-GCCUCCc- -3'
miRNA:   3'- -GCGGUG-CugC-UUUGCGGgUGGAGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.