miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18460 5' -57.2 NC_004681.1 + 900 0.7 0.461365
Target:  5'- aGCCGCccu--GGCGUCCGCCUCCAu -3'
miRNA:   3'- gCGGUGcugcuUUGCGGGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 2873 0.66 0.711041
Target:  5'- uCGaCCGUGACGAAGC-CCC-CCUCCc- -3'
miRNA:   3'- -GC-GGUGCUGCUUUGcGGGuGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 3133 0.69 0.480914
Target:  5'- gCGCCcaGCGGCu---CGCCCuCCUCCAGg -3'
miRNA:   3'- -GCGG--UGCUGcuuuGCGGGuGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 5582 0.67 0.636968
Target:  5'- uCGCCguagauguccaGCGuCGAGGCGaCCCACUcCCAGa -3'
miRNA:   3'- -GCGG-----------UGCuGCUUUGC-GGGUGGaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 5777 0.66 0.668929
Target:  5'- aCGCCaccGCGGCGAuguggaagAACGCUgGCCgccCCAAc -3'
miRNA:   3'- -GCGG---UGCUGCU--------UUGCGGgUGGa--GGUU- -5'
18460 5' -57.2 NC_004681.1 + 5826 0.67 0.626294
Target:  5'- gCGgCACGA-GAAGCGCCUcaGCC-CCGAg -3'
miRNA:   3'- -GCgGUGCUgCUUUGCGGG--UGGaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 7256 0.68 0.562645
Target:  5'- -uCCACGACGcgGcCGUCCACCUCg-- -3'
miRNA:   3'- gcGGUGCUGCuuU-GCGGGUGGAGguu -5'
18460 5' -57.2 NC_004681.1 + 7292 0.67 0.646572
Target:  5'- cCGCCuGCGACGAgcugcacgccagcGACGuUCCACCcCCGg -3'
miRNA:   3'- -GCGG-UGCUGCU-------------UUGC-GGGUGGaGGUu -5'
18460 5' -57.2 NC_004681.1 + 7352 0.77 0.171621
Target:  5'- cCGCCGCGGCGAAGCcucccgccaaGCCCGCggCCGAg -3'
miRNA:   3'- -GCGGUGCUGCUUUG----------CGGGUGgaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 7879 0.74 0.25246
Target:  5'- gCGCCcguCGAUGAGAcCGCcgCCGCCUCCGAg -3'
miRNA:   3'- -GCGGu--GCUGCUUU-GCG--GGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 12468 0.69 0.500857
Target:  5'- gGCCACGAgCGGuuCGUaCACCUUCAAg -3'
miRNA:   3'- gCGGUGCU-GCUuuGCGgGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 14441 0.73 0.314631
Target:  5'- aCGCCGCccgcgaggcggaGGCGAAcgccgcGCGCgCCGCCUCCGc -3'
miRNA:   3'- -GCGGUG------------CUGCUU------UGCG-GGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 14573 0.69 0.50995
Target:  5'- gCGCCcugcuCGGCGGAggcggcgcgcgcgGCGUUCGCCUCCGc -3'
miRNA:   3'- -GCGGu----GCUGCUU-------------UGCGGGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 16377 0.7 0.432852
Target:  5'- gCGCCAaGugGGuugccuCGgCCACCUCCAAg -3'
miRNA:   3'- -GCGGUgCugCUuu----GCgGGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 17667 0.66 0.686927
Target:  5'- gGCCGCGGCGucACuGCCCcaguugaaggggguGCCgCCAGg -3'
miRNA:   3'- gCGGUGCUGCuuUG-CGGG--------------UGGaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 18398 0.67 0.604969
Target:  5'- gGCCGCGGCGGcaAACGCCUucGCaC-CCGGa -3'
miRNA:   3'- gCGGUGCUGCU--UUGCGGG--UG-GaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 20263 0.66 0.679531
Target:  5'- uCGCCACGAacaacAACGuCCCGCCgcUCCu- -3'
miRNA:   3'- -GCGGUGCUgcu--UUGC-GGGUGG--AGGuu -5'
18460 5' -57.2 NC_004681.1 + 22276 0.69 0.521156
Target:  5'- gCGUgGCGGCGuGGGCGCCCugC-CCGu -3'
miRNA:   3'- -GCGgUGCUGC-UUUGCGGGugGaGGUu -5'
18460 5' -57.2 NC_004681.1 + 22385 0.76 0.19562
Target:  5'- gCGCCAUGACGGgcagGGCGCCCACgCcgCCAc -3'
miRNA:   3'- -GCGGUGCUGCU----UUGCGGGUG-Ga-GGUu -5'
18460 5' -57.2 NC_004681.1 + 22818 0.73 0.307186
Target:  5'- uCGCCGgGGCGA--C-CCCGCCUCCGAu -3'
miRNA:   3'- -GCGGUgCUGCUuuGcGGGUGGAGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.