miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18460 5' -57.2 NC_004681.1 + 23357 0.67 0.636968
Target:  5'- gCGCC-CGAgGugGucaaccuccUGCCCGCCUCCAc -3'
miRNA:   3'- -GCGGuGCUgCuuU---------GCGGGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 23652 0.69 0.500857
Target:  5'- aGCCGgGugagcccauCGAGcuggccuccuacGCGCCCGCCUCCGc -3'
miRNA:   3'- gCGGUgCu--------GCUU------------UGCGGGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 25290 0.66 0.668929
Target:  5'- uCGCC-CGAUGAGACGaCuCCGCCUgagCCu- -3'
miRNA:   3'- -GCGGuGCUGCUUUGC-G-GGUGGA---GGuu -5'
18460 5' -57.2 NC_004681.1 + 26222 0.8 0.105671
Target:  5'- cCGCCACGGCGGcGAUGCCCGCCcCCu- -3'
miRNA:   3'- -GCGGUGCUGCU-UUGCGGGUGGaGGuu -5'
18460 5' -57.2 NC_004681.1 + 27910 0.76 0.19562
Target:  5'- gCGCCACcguuGGCGccgccGCGCCCAUCUCCAGa -3'
miRNA:   3'- -GCGGUG----CUGCuu---UGCGGGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 29682 0.66 0.69009
Target:  5'- gGCCAgcACGuuGcCGCCCACCUCg-- -3'
miRNA:   3'- gCGGUgcUGCuuU-GCGGGUGGAGguu -5'
18460 5' -57.2 NC_004681.1 + 30816 0.69 0.500857
Target:  5'- aCGCCACGGCcu-GgGCCUACCUgcCCGGa -3'
miRNA:   3'- -GCGGUGCUGcuuUgCGGGUGGA--GGUU- -5'
18460 5' -57.2 NC_004681.1 + 31264 0.67 0.604969
Target:  5'- uGCCGCGAauc--UGCCCGCC-CCAGg -3'
miRNA:   3'- gCGGUGCUgcuuuGCGGGUGGaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 31317 0.68 0.541768
Target:  5'- uCGCCugGugGucGCaGCCUACggCUCCAAu -3'
miRNA:   3'- -GCGGugCugCuuUG-CGGGUG--GAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 33306 0.73 0.306449
Target:  5'- gCGCCGCGGuguacgcCGGGACGUUCGCCgUCCAGg -3'
miRNA:   3'- -GCGGUGCU-------GCUUUGCGGGUGG-AGGUU- -5'
18460 5' -57.2 NC_004681.1 + 34345 0.66 0.6985
Target:  5'- aCGCCGCGGCGGcgugaggguuguGCGCgcugcggaaauCCACCcCCAGa -3'
miRNA:   3'- -GCGGUGCUGCUu-----------UGCG-----------GGUGGaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 34782 0.66 0.711041
Target:  5'- gCGCCGaaGCGAGAC-CCCGaacaaCUCCAGg -3'
miRNA:   3'- -GCGGUgcUGCUUUGcGGGUg----GAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 37043 0.69 0.480914
Target:  5'- cCGCCGCGugGAGuCGCCUACUg---- -3'
miRNA:   3'- -GCGGUGCugCUUuGCGGGUGGagguu -5'
18460 5' -57.2 NC_004681.1 + 38319 0.68 0.562645
Target:  5'- gCGCCGCcGCGGGACGUcuucggCCGCC-CCAu -3'
miRNA:   3'- -GCGGUGcUGCUUUGCG------GGUGGaGGUu -5'
18460 5' -57.2 NC_004681.1 + 39100 0.68 0.583731
Target:  5'- gGCCGuCGACGuuGACGCCUuCCUCg-- -3'
miRNA:   3'- gCGGU-GCUGCu-UUGCGGGuGGAGguu -5'
18460 5' -57.2 NC_004681.1 + 39132 0.7 0.471088
Target:  5'- cCGCCGCGACaAGGCGCUCAUCgugCUg- -3'
miRNA:   3'- -GCGGUGCUGcUUUGCGGGUGGa--GGuu -5'
18460 5' -57.2 NC_004681.1 + 40561 0.66 0.685872
Target:  5'- gGCCGCGGCGuucaaugucauCGgCCGCCUCa-- -3'
miRNA:   3'- gCGGUGCUGCuuu--------GCgGGUGGAGguu -5'
18460 5' -57.2 NC_004681.1 + 40981 0.66 0.678472
Target:  5'- aG-CGCGGCGAAGCagguuaaGCCCACCUUg-- -3'
miRNA:   3'- gCgGUGCUGCUUUG-------CGGGUGGAGguu -5'
18460 5' -57.2 NC_004681.1 + 41113 0.72 0.345769
Target:  5'- uGCCGCGAUGGAuggcaaGCCCACCauugaggacgUCCAc -3'
miRNA:   3'- gCGGUGCUGCUUug----CGGGUGG----------AGGUu -5'
18460 5' -57.2 NC_004681.1 + 41615 1.06 0.001437
Target:  5'- cCGCCACGACGAAACGCCCACCUCCAAg -3'
miRNA:   3'- -GCGGUGCUGCUUUGCGGGUGGAGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.