Results 61 - 77 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18460 | 5' | -57.2 | NC_004681.1 | + | 51500 | 0.68 | 0.562645 |
Target: 5'- cCGCCAgcuCGGCuacaccGACGCcaCCACCUCCGAa -3' miRNA: 3'- -GCGGU---GCUGcu----UUGCG--GGUGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 51638 | 0.67 | 0.636968 |
Target: 5'- aGCUugGGCGAugagcGCGUCgACCUCUu- -3' miRNA: 3'- gCGGugCUGCUu----UGCGGgUGGAGGuu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 52268 | 0.73 | 0.322212 |
Target: 5'- gGCCGCGACGcGGACGUUguCCUCCu- -3' miRNA: 3'- gCGGUGCUGC-UUUGCGGguGGAGGuu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 52556 | 0.71 | 0.405392 |
Target: 5'- aCGCUAUcgcgGACGAGugGUCC-CCUCCGu -3' miRNA: 3'- -GCGGUG----CUGCUUugCGGGuGGAGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 52891 | 0.7 | 0.471088 |
Target: 5'- aGCCcgGCGACGAAAuccaaauccUGCCCGaCUCCGAg -3' miRNA: 3'- gCGG--UGCUGCUUU---------GCGGGUgGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 54273 | 0.67 | 0.604969 |
Target: 5'- cCGCCGaagaGGCGcugguccuCGCCCACCUCa-- -3' miRNA: 3'- -GCGGUg---CUGCuuu-----GCGGGUGGAGguu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 55186 | 0.82 | 0.077957 |
Target: 5'- uCGcCCGCGACGGAAUGCCCaucuaccccacaGCCUCCGAa -3' miRNA: 3'- -GC-GGUGCUGCUUUGCGGG------------UGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 56533 | 0.73 | 0.285661 |
Target: 5'- gGUgACGAUGAccucGCgGCCCGCCUCCAAc -3' miRNA: 3'- gCGgUGCUGCUu---UG-CGGGUGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 56766 | 0.7 | 0.461365 |
Target: 5'- uGCCGCGGgGcGAgGCCCACCUgUAc -3' miRNA: 3'- gCGGUGCUgCuUUgCGGGUGGAgGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 57068 | 0.67 | 0.647639 |
Target: 5'- aGUC-CGugGAcgaaGGCGUCUGCCUCCGc -3' miRNA: 3'- gCGGuGCugCU----UUGCGGGUGGAGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 61449 | 0.7 | 0.442243 |
Target: 5'- cCGCaGCGACGGGccgaucuCGUCUACCUCCAc -3' miRNA: 3'- -GCGgUGCUGCUUu------GCGGGUGGAGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 63150 | 0.66 | 0.711041 |
Target: 5'- gGUCuGCGACGAcuCGCCC-CUUCCc- -3' miRNA: 3'- gCGG-UGCUGCUuuGCGGGuGGAGGuu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 63796 | 0.67 | 0.626294 |
Target: 5'- gCGaCCAUGACGAGuccgcgGCGCaCCACUUgCAGg -3' miRNA: 3'- -GC-GGUGCUGCUU------UGCG-GGUGGAgGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 64876 | 0.69 | 0.510965 |
Target: 5'- gCGagACGAcCGGAAUGCCCACCgcCCGAa -3' miRNA: 3'- -GCggUGCU-GCUUUGCGGGUGGa-GGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 68560 | 0.66 | 0.711041 |
Target: 5'- uCGUCACGACGAGGucaGCCUucuucggcaGCCUCa-- -3' miRNA: 3'- -GCGGUGCUGCUUUg--CGGG---------UGGAGguu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 69114 | 0.66 | 0.700597 |
Target: 5'- gCGCCGCcuCGcccGCGCCCugGCCUCCc- -3' miRNA: 3'- -GCGGUGcuGCuu-UGCGGG--UGGAGGuu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 71258 | 0.71 | 0.387706 |
Target: 5'- aGCCAgCGugGAAAuUGCCCGaCUCCAGu -3' miRNA: 3'- gCGGU-GCugCUUU-GCGGGUgGAGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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