miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18460 5' -57.2 NC_004681.1 + 71258 0.71 0.387706
Target:  5'- aGCCAgCGugGAAAuUGCCCGaCUCCAGu -3'
miRNA:   3'- gCGGU-GCugCUUU-GCGGGUgGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 69114 0.66 0.700597
Target:  5'- gCGCCGCcuCGcccGCGCCCugGCCUCCc- -3'
miRNA:   3'- -GCGGUGcuGCuu-UGCGGG--UGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 68560 0.66 0.711041
Target:  5'- uCGUCACGACGAGGucaGCCUucuucggcaGCCUCa-- -3'
miRNA:   3'- -GCGGUGCUGCUUUg--CGGG---------UGGAGguu -5'
18460 5' -57.2 NC_004681.1 + 64876 0.69 0.510965
Target:  5'- gCGagACGAcCGGAAUGCCCACCgcCCGAa -3'
miRNA:   3'- -GCggUGCU-GCUUUGCGGGUGGa-GGUU- -5'
18460 5' -57.2 NC_004681.1 + 63796 0.67 0.626294
Target:  5'- gCGaCCAUGACGAGuccgcgGCGCaCCACUUgCAGg -3'
miRNA:   3'- -GC-GGUGCUGCUU------UGCG-GGUGGAgGUU- -5'
18460 5' -57.2 NC_004681.1 + 63150 0.66 0.711041
Target:  5'- gGUCuGCGACGAcuCGCCC-CUUCCc- -3'
miRNA:   3'- gCGG-UGCUGCUuuGCGGGuGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 61449 0.7 0.442243
Target:  5'- cCGCaGCGACGGGccgaucuCGUCUACCUCCAc -3'
miRNA:   3'- -GCGgUGCUGCUUu------GCGGGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 57068 0.67 0.647639
Target:  5'- aGUC-CGugGAcgaaGGCGUCUGCCUCCGc -3'
miRNA:   3'- gCGGuGCugCU----UUGCGGGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 56766 0.7 0.461365
Target:  5'- uGCCGCGGgGcGAgGCCCACCUgUAc -3'
miRNA:   3'- gCGGUGCUgCuUUgCGGGUGGAgGUu -5'
18460 5' -57.2 NC_004681.1 + 56533 0.73 0.285661
Target:  5'- gGUgACGAUGAccucGCgGCCCGCCUCCAAc -3'
miRNA:   3'- gCGgUGCUGCUu---UG-CGGGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 55186 0.82 0.077957
Target:  5'- uCGcCCGCGACGGAAUGCCCaucuaccccacaGCCUCCGAa -3'
miRNA:   3'- -GC-GGUGCUGCUUUGCGGG------------UGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 54273 0.67 0.604969
Target:  5'- cCGCCGaagaGGCGcugguccuCGCCCACCUCa-- -3'
miRNA:   3'- -GCGGUg---CUGCuuu-----GCGGGUGGAGguu -5'
18460 5' -57.2 NC_004681.1 + 52891 0.7 0.471088
Target:  5'- aGCCcgGCGACGAAAuccaaauccUGCCCGaCUCCGAg -3'
miRNA:   3'- gCGG--UGCUGCUUU---------GCGGGUgGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 52556 0.71 0.405392
Target:  5'- aCGCUAUcgcgGACGAGugGUCC-CCUCCGu -3'
miRNA:   3'- -GCGGUG----CUGCUUugCGGGuGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 52268 0.73 0.322212
Target:  5'- gGCCGCGACGcGGACGUUguCCUCCu- -3'
miRNA:   3'- gCGGUGCUGC-UUUGCGGguGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 51638 0.67 0.636968
Target:  5'- aGCUugGGCGAugagcGCGUCgACCUCUu- -3'
miRNA:   3'- gCGGugCUGCUu----UGCGGgUGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 51500 0.68 0.562645
Target:  5'- cCGCCAgcuCGGCuacaccGACGCcaCCACCUCCGAa -3'
miRNA:   3'- -GCGGU---GCUGcu----UUGCG--GGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 51427 0.68 0.541768
Target:  5'- aCGCCACGACGu-ACGCC-ACCaucgUCAAg -3'
miRNA:   3'- -GCGGUGCUGCuuUGCGGgUGGa---GGUU- -5'
18460 5' -57.2 NC_004681.1 + 50965 0.68 0.549048
Target:  5'- uGCUugucgggguacucgGCGGCGAGGCGCUuCACCUCUu- -3'
miRNA:   3'- gCGG--------------UGCUGCUUUGCGG-GUGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 50845 0.69 0.521156
Target:  5'- uCGCCGaagaGGUGAAGCGCCuCGCCgCCGAg -3'
miRNA:   3'- -GCGGUg---CUGCUUUGCGG-GUGGaGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.