miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18460 5' -57.2 NC_004681.1 + 50659 0.67 0.604969
Target:  5'- gCGCU---GCGAGACGCCUACCgcaCCGGg -3'
miRNA:   3'- -GCGGugcUGCUUUGCGGGUGGa--GGUU- -5'
18460 5' -57.2 NC_004681.1 + 50453 0.69 0.490838
Target:  5'- -aCCACGuCGugggcGACGCCCACC-CCGAc -3'
miRNA:   3'- gcGGUGCuGCu----UUGCGGGUGGaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 49337 0.67 0.61136
Target:  5'- cCGCCACGGCGGcgccgcgGGCGCUgaccacugggcgcaCACCUUCu- -3'
miRNA:   3'- -GCGGUGCUGCU-------UUGCGG--------------GUGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 48500 0.66 0.700597
Target:  5'- uCGCCGCGgagaacccggaGCGGGugGCgCACUgCCAAu -3'
miRNA:   3'- -GCGGUGC-----------UGCUUugCGgGUGGaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 47954 0.69 0.521156
Target:  5'- uCGCCAUc-CGAucuACGCCUACUUCCGg -3'
miRNA:   3'- -GCGGUGcuGCUu--UGCGGGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 47388 0.67 0.647639
Target:  5'- gCGCCACGGCGAcGCGgUCCugCgacgucgUCAAg -3'
miRNA:   3'- -GCGGUGCUGCUuUGC-GGGugGa------GGUU- -5'
18460 5' -57.2 NC_004681.1 + 47110 0.66 0.668929
Target:  5'- cCGCCgcugaGCGACGAGaACGCCgaggGCCgcgCCGAa -3'
miRNA:   3'- -GCGG-----UGCUGCUU-UGCGGg---UGGa--GGUU- -5'
18460 5' -57.2 NC_004681.1 + 46587 0.67 0.626294
Target:  5'- uGCC-UGACGAAGCccagaccgGCCCACUcgCCGAg -3'
miRNA:   3'- gCGGuGCUGCUUUG--------CGGGUGGa-GGUU- -5'
18460 5' -57.2 NC_004681.1 + 45674 0.66 0.658295
Target:  5'- gGCCACcuuGCGGgcGAUGUCCACCugcUCCAGg -3'
miRNA:   3'- gCGGUGc--UGCU--UUGCGGGUGG---AGGUU- -5'
18460 5' -57.2 NC_004681.1 + 45402 0.67 0.604969
Target:  5'- gGCaGCGGUGAAGCGCucagcaacuucgCCGCCUCCAu -3'
miRNA:   3'- gCGgUGCUGCUUUGCG------------GGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 45161 0.7 0.441299
Target:  5'- uCGaCCGCGGCGGAugcuucgGCGUCCcCCUCUAGg -3'
miRNA:   3'- -GC-GGUGCUGCUU-------UGCGGGuGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 44998 0.66 0.711041
Target:  5'- gGCCuCGugGGcguCGCCCGCUUCg-- -3'
miRNA:   3'- gCGGuGCugCUuu-GCGGGUGGAGguu -5'
18460 5' -57.2 NC_004681.1 + 44914 0.7 0.421737
Target:  5'- cCGCCcgucuCGAUGucguaggucuUGCCCACCUCCAGg -3'
miRNA:   3'- -GCGGu----GCUGCuuu-------GCGGGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 43873 0.66 0.700597
Target:  5'- gGUCACGACucGcCGCCCugCUCgGu -3'
miRNA:   3'- gCGGUGCUGcuUuGCGGGugGAGgUu -5'
18460 5' -57.2 NC_004681.1 + 43804 0.68 0.552177
Target:  5'- -uCCACGAgGuccGCGCCCACCcCCGc -3'
miRNA:   3'- gcGGUGCUgCuu-UGCGGGUGGaGGUu -5'
18460 5' -57.2 NC_004681.1 + 41799 0.7 0.432852
Target:  5'- gCGCCGCaGugGaAGACGCC-GCCUCCc- -3'
miRNA:   3'- -GCGGUG-CugC-UUUGCGGgUGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 41751 0.71 0.396485
Target:  5'- aCGaCCGCGACGGGAaccuccUGCaCGCCUCCAGg -3'
miRNA:   3'- -GC-GGUGCUGCUUU------GCGgGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 41615 1.06 0.001437
Target:  5'- cCGCCACGACGAAACGCCCACCUCCAAg -3'
miRNA:   3'- -GCGGUGCUGCUUUGCGGGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 41113 0.72 0.345769
Target:  5'- uGCCGCGAUGGAuggcaaGCCCACCauugaggacgUCCAc -3'
miRNA:   3'- gCGGUGCUGCUUug----CGGGUGG----------AGGUu -5'
18460 5' -57.2 NC_004681.1 + 40981 0.66 0.678472
Target:  5'- aG-CGCGGCGAAGCagguuaaGCCCACCUUg-- -3'
miRNA:   3'- gCgGUGCUGCUUUG-------CGGGUGGAGguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.