Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18460 | 5' | -57.2 | NC_004681.1 | + | 40561 | 0.66 | 0.685872 |
Target: 5'- gGCCGCGGCGuucaaugucauCGgCCGCCUCa-- -3' miRNA: 3'- gCGGUGCUGCuuu--------GCgGGUGGAGguu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 39132 | 0.7 | 0.471088 |
Target: 5'- cCGCCGCGACaAGGCGCUCAUCgugCUg- -3' miRNA: 3'- -GCGGUGCUGcUUUGCGGGUGGa--GGuu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 39100 | 0.68 | 0.583731 |
Target: 5'- gGCCGuCGACGuuGACGCCUuCCUCg-- -3' miRNA: 3'- gCGGU-GCUGCu-UUGCGGGuGGAGguu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 38319 | 0.68 | 0.562645 |
Target: 5'- gCGCCGCcGCGGGACGUcuucggCCGCC-CCAu -3' miRNA: 3'- -GCGGUGcUGCUUUGCG------GGUGGaGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 37043 | 0.69 | 0.480914 |
Target: 5'- cCGCCGCGugGAGuCGCCUACUg---- -3' miRNA: 3'- -GCGGUGCugCUUuGCGGGUGGagguu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 34782 | 0.66 | 0.711041 |
Target: 5'- gCGCCGaaGCGAGAC-CCCGaacaaCUCCAGg -3' miRNA: 3'- -GCGGUgcUGCUUUGcGGGUg----GAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 34345 | 0.66 | 0.6985 |
Target: 5'- aCGCCGCGGCGGcgugaggguuguGCGCgcugcggaaauCCACCcCCAGa -3' miRNA: 3'- -GCGGUGCUGCUu-----------UGCG-----------GGUGGaGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 33306 | 0.73 | 0.306449 |
Target: 5'- gCGCCGCGGuguacgcCGGGACGUUCGCCgUCCAGg -3' miRNA: 3'- -GCGGUGCU-------GCUUUGCGGGUGG-AGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 31317 | 0.68 | 0.541768 |
Target: 5'- uCGCCugGugGucGCaGCCUACggCUCCAAu -3' miRNA: 3'- -GCGGugCugCuuUG-CGGGUG--GAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 31264 | 0.67 | 0.604969 |
Target: 5'- uGCCGCGAauc--UGCCCGCC-CCAGg -3' miRNA: 3'- gCGGUGCUgcuuuGCGGGUGGaGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 30816 | 0.69 | 0.500857 |
Target: 5'- aCGCCACGGCcu-GgGCCUACCUgcCCGGa -3' miRNA: 3'- -GCGGUGCUGcuuUgCGGGUGGA--GGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 29682 | 0.66 | 0.69009 |
Target: 5'- gGCCAgcACGuuGcCGCCCACCUCg-- -3' miRNA: 3'- gCGGUgcUGCuuU-GCGGGUGGAGguu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 27910 | 0.76 | 0.19562 |
Target: 5'- gCGCCACcguuGGCGccgccGCGCCCAUCUCCAGa -3' miRNA: 3'- -GCGGUG----CUGCuu---UGCGGGUGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 26222 | 0.8 | 0.105671 |
Target: 5'- cCGCCACGGCGGcGAUGCCCGCCcCCu- -3' miRNA: 3'- -GCGGUGCUGCU-UUGCGGGUGGaGGuu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 25290 | 0.66 | 0.668929 |
Target: 5'- uCGCC-CGAUGAGACGaCuCCGCCUgagCCu- -3' miRNA: 3'- -GCGGuGCUGCUUUGC-G-GGUGGA---GGuu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 23652 | 0.69 | 0.500857 |
Target: 5'- aGCCGgGugagcccauCGAGcuggccuccuacGCGCCCGCCUCCGc -3' miRNA: 3'- gCGGUgCu--------GCUU------------UGCGGGUGGAGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 23357 | 0.67 | 0.636968 |
Target: 5'- gCGCC-CGAgGugGucaaccuccUGCCCGCCUCCAc -3' miRNA: 3'- -GCGGuGCUgCuuU---------GCGGGUGGAGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 22818 | 0.73 | 0.307186 |
Target: 5'- uCGCCGgGGCGA--C-CCCGCCUCCGAu -3' miRNA: 3'- -GCGGUgCUGCUuuGcGGGUGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 22385 | 0.76 | 0.19562 |
Target: 5'- gCGCCAUGACGGgcagGGCGCCCACgCcgCCAc -3' miRNA: 3'- -GCGGUGCUGCU----UUGCGGGUG-Ga-GGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 22276 | 0.69 | 0.521156 |
Target: 5'- gCGUgGCGGCGuGGGCGCCCugC-CCGu -3' miRNA: 3'- -GCGgUGCUGC-UUUGCGGGugGaGGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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