miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18460 5' -57.2 NC_004681.1 + 12468 0.69 0.500857
Target:  5'- gGCCACGAgCGGuuCGUaCACCUUCAAg -3'
miRNA:   3'- gCGGUGCU-GCUuuGCGgGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 16377 0.7 0.432852
Target:  5'- gCGCCAaGugGGuugccuCGgCCACCUCCAAg -3'
miRNA:   3'- -GCGGUgCugCUuu----GCgGGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 41799 0.7 0.432852
Target:  5'- gCGCCGCaGugGaAGACGCC-GCCUCCc- -3'
miRNA:   3'- -GCGGUG-CugC-UUUGCGGgUGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 900 0.7 0.461365
Target:  5'- aGCCGCccu--GGCGUCCGCCUCCAu -3'
miRNA:   3'- gCGGUGcugcuUUGCGGGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 56766 0.7 0.461365
Target:  5'- uGCCGCGGgGcGAgGCCCACCUgUAc -3'
miRNA:   3'- gCGGUGCUgCuUUgCGGGUGGAgGUu -5'
18460 5' -57.2 NC_004681.1 + 39132 0.7 0.471088
Target:  5'- cCGCCGCGACaAGGCGCUCAUCgugCUg- -3'
miRNA:   3'- -GCGGUGCUGcUUUGCGGGUGGa--GGuu -5'
18460 5' -57.2 NC_004681.1 + 52891 0.7 0.471088
Target:  5'- aGCCcgGCGACGAAAuccaaauccUGCCCGaCUCCGAg -3'
miRNA:   3'- gCGG--UGCUGCUUU---------GCGGGUgGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 3133 0.69 0.480914
Target:  5'- gCGCCcaGCGGCu---CGCCCuCCUCCAGg -3'
miRNA:   3'- -GCGG--UGCUGcuuuGCGGGuGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 50453 0.69 0.490838
Target:  5'- -aCCACGuCGugggcGACGCCCACC-CCGAc -3'
miRNA:   3'- gcGGUGCuGCu----UUGCGGGUGGaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 52556 0.71 0.405392
Target:  5'- aCGCUAUcgcgGACGAGugGUCC-CCUCCGu -3'
miRNA:   3'- -GCGGUG----CUGCUUugCGGGuGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 41751 0.71 0.396485
Target:  5'- aCGaCCGCGACGGGAaccuccUGCaCGCCUCCAGg -3'
miRNA:   3'- -GC-GGUGCUGCUUU------GCGgGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 71258 0.71 0.387706
Target:  5'- aGCCAgCGugGAAAuUGCCCGaCUCCAGu -3'
miRNA:   3'- gCGGU-GCugCUUU-GCGGGUgGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 55186 0.82 0.077957
Target:  5'- uCGcCCGCGACGGAAUGCCCaucuaccccacaGCCUCCGAa -3'
miRNA:   3'- -GC-GGUGCUGCUUUGCGGG------------UGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 26222 0.8 0.105671
Target:  5'- cCGCCACGGCGGcGAUGCCCGCCcCCu- -3'
miRNA:   3'- -GCGGUGCUGCU-UUGCGGGUGGaGGuu -5'
18460 5' -57.2 NC_004681.1 + 7352 0.77 0.171621
Target:  5'- cCGCCGCGGCGAAGCcucccgccaaGCCCGCggCCGAg -3'
miRNA:   3'- -GCGGUGCUGCUUUG----------CGGGUGgaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 7879 0.74 0.25246
Target:  5'- gCGCCcguCGAUGAGAcCGCcgCCGCCUCCGAg -3'
miRNA:   3'- -GCGGu--GCUGCUUU-GCG--GGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 33306 0.73 0.306449
Target:  5'- gCGCCGCGGuguacgcCGGGACGUUCGCCgUCCAGg -3'
miRNA:   3'- -GCGGUGCU-------GCUUUGCGGGUGG-AGGUU- -5'
18460 5' -57.2 NC_004681.1 + 22818 0.73 0.307186
Target:  5'- uCGCCGgGGCGA--C-CCCGCCUCCGAu -3'
miRNA:   3'- -GCGGUgCUGCUuuGcGGGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 14441 0.73 0.314631
Target:  5'- aCGCCGCccgcgaggcggaGGCGAAcgccgcGCGCgCCGCCUCCGc -3'
miRNA:   3'- -GCGGUG------------CUGCUU------UGCG-GGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 52268 0.73 0.322212
Target:  5'- gGCCGCGACGcGGACGUUguCCUCCu- -3'
miRNA:   3'- gCGGUGCUGC-UUUGCGGguGGAGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.