Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18460 | 5' | -57.2 | NC_004681.1 | + | 16377 | 0.7 | 0.432852 |
Target: 5'- gCGCCAaGugGGuugccuCGgCCACCUCCAAg -3' miRNA: 3'- -GCGGUgCugCUuu----GCgGGUGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 41799 | 0.7 | 0.432852 |
Target: 5'- gCGCCGCaGugGaAGACGCC-GCCUCCc- -3' miRNA: 3'- -GCGGUG-CugC-UUUGCGGgUGGAGGuu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 47954 | 0.69 | 0.521156 |
Target: 5'- uCGCCAUc-CGAucuACGCCUACUUCCGg -3' miRNA: 3'- -GCGGUGcuGCUu--UGCGGGUGGAGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 22276 | 0.69 | 0.521156 |
Target: 5'- gCGUgGCGGCGuGGGCGCCCugC-CCGu -3' miRNA: 3'- -GCGgUGCUGC-UUUGCGGGugGaGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 30816 | 0.69 | 0.500857 |
Target: 5'- aCGCCACGGCcu-GgGCCUACCUgcCCGGa -3' miRNA: 3'- -GCGGUGCUGcuuUgCGGGUGGA--GGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 23652 | 0.69 | 0.500857 |
Target: 5'- aGCCGgGugagcccauCGAGcuggccuccuacGCGCCCGCCUCCGc -3' miRNA: 3'- gCGGUgCu--------GCUU------------UGCGGGUGGAGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 12468 | 0.69 | 0.500857 |
Target: 5'- gGCCACGAgCGGuuCGUaCACCUUCAAg -3' miRNA: 3'- gCGGUGCU-GCUuuGCGgGUGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 50453 | 0.69 | 0.490838 |
Target: 5'- -aCCACGuCGugggcGACGCCCACC-CCGAc -3' miRNA: 3'- gcGGUGCuGCu----UUGCGGGUGGaGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 3133 | 0.69 | 0.480914 |
Target: 5'- gCGCCcaGCGGCu---CGCCCuCCUCCAGg -3' miRNA: 3'- -GCGG--UGCUGcuuuGCGGGuGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 52891 | 0.7 | 0.471088 |
Target: 5'- aGCCcgGCGACGAAAuccaaauccUGCCCGaCUCCGAg -3' miRNA: 3'- gCGG--UGCUGCUUU---------GCGGGUgGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 39132 | 0.7 | 0.471088 |
Target: 5'- cCGCCGCGACaAGGCGCUCAUCgugCUg- -3' miRNA: 3'- -GCGGUGCUGcUUUGCGGGUGGa--GGuu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 56766 | 0.7 | 0.461365 |
Target: 5'- uGCCGCGGgGcGAgGCCCACCUgUAc -3' miRNA: 3'- gCGGUGCUgCuUUgCGGGUGGAgGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 900 | 0.7 | 0.461365 |
Target: 5'- aGCCGCccu--GGCGUCCGCCUCCAu -3' miRNA: 3'- gCGGUGcugcuUUGCGGGUGGAGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 61449 | 0.7 | 0.442243 |
Target: 5'- cCGCaGCGACGGGccgaucuCGUCUACCUCCAc -3' miRNA: 3'- -GCGgUGCUGCUUu------GCGGGUGGAGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 45161 | 0.7 | 0.441299 |
Target: 5'- uCGaCCGCGGCGGAugcuucgGCGUCCcCCUCUAGg -3' miRNA: 3'- -GC-GGUGCUGCUU-------UGCGGGuGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 44914 | 0.7 | 0.421737 |
Target: 5'- cCGCCcgucuCGAUGucguaggucuUGCCCACCUCCAGg -3' miRNA: 3'- -GCGGu----GCUGCuuu-------GCGGGUGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 41113 | 0.72 | 0.345769 |
Target: 5'- uGCCGCGAUGGAuggcaaGCCCACCauugaggacgUCCAc -3' miRNA: 3'- gCGGUGCUGCUUug----CGGGUGG----------AGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 56533 | 0.73 | 0.285661 |
Target: 5'- gGUgACGAUGAccucGCgGCCCGCCUCCAAc -3' miRNA: 3'- gCGgUGCUGCUu---UG-CGGGUGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 22385 | 0.76 | 0.19562 |
Target: 5'- gCGCCAUGACGGgcagGGCGCCCACgCcgCCAc -3' miRNA: 3'- -GCGGUGCUGCU----UUGCGGGUG-Ga-GGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 68560 | 0.66 | 0.711041 |
Target: 5'- uCGUCACGACGAGGucaGCCUucuucggcaGCCUCa-- -3' miRNA: 3'- -GCGGUGCUGCUUUg--CGGG---------UGGAGguu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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