miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18460 5' -57.2 NC_004681.1 + 27910 0.76 0.19562
Target:  5'- gCGCCACcguuGGCGccgccGCGCCCAUCUCCAGa -3'
miRNA:   3'- -GCGGUG----CUGCuu---UGCGGGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 45674 0.66 0.658295
Target:  5'- gGCCACcuuGCGGgcGAUGUCCACCugcUCCAGg -3'
miRNA:   3'- gCGGUGc--UGCU--UUGCGGGUGG---AGGUU- -5'
18460 5' -57.2 NC_004681.1 + 40561 0.66 0.685872
Target:  5'- gGCCGCGGCGuucaaugucauCGgCCGCCUCa-- -3'
miRNA:   3'- gCGGUGCUGCuuu--------GCgGGUGGAGguu -5'
18460 5' -57.2 NC_004681.1 + 68560 0.66 0.711041
Target:  5'- uCGUCACGACGAGGucaGCCUucuucggcaGCCUCa-- -3'
miRNA:   3'- -GCGGUGCUGCUUUg--CGGG---------UGGAGguu -5'
18460 5' -57.2 NC_004681.1 + 44914 0.7 0.421737
Target:  5'- cCGCCcgucuCGAUGucguaggucuUGCCCACCUCCAGg -3'
miRNA:   3'- -GCGGu----GCUGCuuu-------GCGGGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 45161 0.7 0.441299
Target:  5'- uCGaCCGCGGCGGAugcuucgGCGUCCcCCUCUAGg -3'
miRNA:   3'- -GC-GGUGCUGCUU-------UGCGGGuGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 37043 0.69 0.480914
Target:  5'- cCGCCGCGugGAGuCGCCUACUg---- -3'
miRNA:   3'- -GCGGUGCugCUUuGCGGGUGGagguu -5'
18460 5' -57.2 NC_004681.1 + 14573 0.69 0.50995
Target:  5'- gCGCCcugcuCGGCGGAggcggcgcgcgcgGCGUUCGCCUCCGc -3'
miRNA:   3'- -GCGGu----GCUGCUU-------------UGCGGGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 38319 0.68 0.562645
Target:  5'- gCGCCGCcGCGGGACGUcuucggCCGCC-CCAu -3'
miRNA:   3'- -GCGGUGcUGCUUUGCG------GGUGGaGGUu -5'
18460 5' -57.2 NC_004681.1 + 5582 0.67 0.636968
Target:  5'- uCGCCguagauguccaGCGuCGAGGCGaCCCACUcCCAGa -3'
miRNA:   3'- -GCGG-----------UGCuGCUUUGC-GGGUGGaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 31264 0.67 0.604969
Target:  5'- uGCCGCGAauc--UGCCCGCC-CCAGg -3'
miRNA:   3'- gCGGUGCUgcuuuGCGGGUGGaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 50965 0.68 0.549048
Target:  5'- uGCUugucgggguacucgGCGGCGAGGCGCUuCACCUCUu- -3'
miRNA:   3'- gCGG--------------UGCUGCUUUGCGG-GUGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 22385 0.76 0.19562
Target:  5'- gCGCCAUGACGGgcagGGCGCCCACgCcgCCAc -3'
miRNA:   3'- -GCGGUGCUGCU----UUGCGGGUG-Ga-GGUu -5'
18460 5' -57.2 NC_004681.1 + 63796 0.67 0.626294
Target:  5'- gCGaCCAUGACGAGuccgcgGCGCaCCACUUgCAGg -3'
miRNA:   3'- -GC-GGUGCUGCUU------UGCG-GGUGGAgGUU- -5'
18460 5' -57.2 NC_004681.1 + 56533 0.73 0.285661
Target:  5'- gGUgACGAUGAccucGCgGCCCGCCUCCAAc -3'
miRNA:   3'- gCGgUGCUGCUu---UG-CGGGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 64876 0.69 0.510965
Target:  5'- gCGagACGAcCGGAAUGCCCACCgcCCGAa -3'
miRNA:   3'- -GCggUGCU-GCUUUGCGGGUGGa-GGUU- -5'
18460 5' -57.2 NC_004681.1 + 51638 0.67 0.636968
Target:  5'- aGCUugGGCGAugagcGCGUCgACCUCUu- -3'
miRNA:   3'- gCGGugCUGCUu----UGCGGgUGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 40981 0.66 0.678472
Target:  5'- aG-CGCGGCGAAGCagguuaaGCCCACCUUg-- -3'
miRNA:   3'- gCgGUGCUGCUUUG-------CGGGUGGAGguu -5'
18460 5' -57.2 NC_004681.1 + 41113 0.72 0.345769
Target:  5'- uGCCGCGAUGGAuggcaaGCCCACCauugaggacgUCCAc -3'
miRNA:   3'- gCGGUGCUGCUUug----CGGGUGG----------AGGUu -5'
18460 5' -57.2 NC_004681.1 + 61449 0.7 0.442243
Target:  5'- cCGCaGCGACGGGccgaucuCGUCUACCUCCAc -3'
miRNA:   3'- -GCGgUGCUGCUUu------GCGGGUGGAGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.