miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18460 5' -57.2 NC_004681.1 + 56533 0.73 0.285661
Target:  5'- gGUgACGAUGAccucGCgGCCCGCCUCCAAc -3'
miRNA:   3'- gCGgUGCUGCUu---UG-CGGGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 45674 0.66 0.658295
Target:  5'- gGCCACcuuGCGGgcGAUGUCCACCugcUCCAGg -3'
miRNA:   3'- gCGGUGc--UGCU--UUGCGGGUGG---AGGUU- -5'
18460 5' -57.2 NC_004681.1 + 50965 0.68 0.549048
Target:  5'- uGCUugucgggguacucgGCGGCGAGGCGCUuCACCUCUu- -3'
miRNA:   3'- gCGG--------------UGCUGCUUUGCGG-GUGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 41113 0.72 0.345769
Target:  5'- uGCCGCGAUGGAuggcaaGCCCACCauugaggacgUCCAc -3'
miRNA:   3'- gCGGUGCUGCUUug----CGGGUGG----------AGGUu -5'
18460 5' -57.2 NC_004681.1 + 22818 0.73 0.307186
Target:  5'- uCGCCGgGGCGA--C-CCCGCCUCCGAu -3'
miRNA:   3'- -GCGGUgCUGCUuuGcGGGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 900 0.7 0.461365
Target:  5'- aGCCGCccu--GGCGUCCGCCUCCAu -3'
miRNA:   3'- gCGGUGcugcuUUGCGGGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 26222 0.8 0.105671
Target:  5'- cCGCCACGGCGGcGAUGCCCGCCcCCu- -3'
miRNA:   3'- -GCGGUGCUGCU-UUGCGGGUGGaGGuu -5'
18460 5' -57.2 NC_004681.1 + 7256 0.68 0.562645
Target:  5'- -uCCACGACGcgGcCGUCCACCUCg-- -3'
miRNA:   3'- gcGGUGCUGCuuU-GCGGGUGGAGguu -5'
18460 5' -57.2 NC_004681.1 + 43804 0.68 0.552177
Target:  5'- -uCCACGAgGuccGCGCCCACCcCCGc -3'
miRNA:   3'- gcGGUGCUgCuu-UGCGGGUGGaGGUu -5'
18460 5' -57.2 NC_004681.1 + 51427 0.68 0.541768
Target:  5'- aCGCCACGACGu-ACGCC-ACCaucgUCAAg -3'
miRNA:   3'- -GCGGUGCUGCuuUGCGGgUGGa---GGUU- -5'
18460 5' -57.2 NC_004681.1 + 41799 0.7 0.432852
Target:  5'- gCGCCGCaGugGaAGACGCC-GCCUCCc- -3'
miRNA:   3'- -GCGGUG-CugC-UUUGCGGgUGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 16377 0.7 0.432852
Target:  5'- gCGCCAaGugGGuugccuCGgCCACCUCCAAg -3'
miRNA:   3'- -GCGGUgCugCUuu----GCgGGUGGAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 52556 0.71 0.405392
Target:  5'- aCGCUAUcgcgGACGAGugGUCC-CCUCCGu -3'
miRNA:   3'- -GCGGUG----CUGCUUugCGGGuGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 33306 0.73 0.306449
Target:  5'- gCGCCGCGGuguacgcCGGGACGUUCGCCgUCCAGg -3'
miRNA:   3'- -GCGGUGCU-------GCUUUGCGGGUGG-AGGUU- -5'
18460 5' -57.2 NC_004681.1 + 23652 0.69 0.500857
Target:  5'- aGCCGgGugagcccauCGAGcuggccuccuacGCGCCCGCCUCCGc -3'
miRNA:   3'- gCGGUgCu--------GCUU------------UGCGGGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 30816 0.69 0.500857
Target:  5'- aCGCCACGGCcu-GgGCCUACCUgcCCGGa -3'
miRNA:   3'- -GCGGUGCUGcuuUgCGGGUGGA--GGUU- -5'
18460 5' -57.2 NC_004681.1 + 22276 0.69 0.521156
Target:  5'- gCGUgGCGGCGuGGGCGCCCugC-CCGu -3'
miRNA:   3'- -GCGgUGCUGC-UUUGCGGGugGaGGUu -5'
18460 5' -57.2 NC_004681.1 + 47954 0.69 0.521156
Target:  5'- uCGCCAUc-CGAucuACGCCUACUUCCGg -3'
miRNA:   3'- -GCGGUGcuGCUu--UGCGGGUGGAGGUu -5'
18460 5' -57.2 NC_004681.1 + 50845 0.69 0.521156
Target:  5'- uCGCCGaagaGGUGAAGCGCCuCGCCgCCGAg -3'
miRNA:   3'- -GCGGUg---CUGCUUUGCGG-GUGGaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 31317 0.68 0.541768
Target:  5'- uCGCCugGugGucGCaGCCUACggCUCCAAu -3'
miRNA:   3'- -GCGGugCugCuuUG-CGGGUG--GAGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.