Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18460 | 5' | -57.2 | NC_004681.1 | + | 57068 | 0.67 | 0.647639 |
Target: 5'- aGUC-CGugGAcgaaGGCGUCUGCCUCCGc -3' miRNA: 3'- gCGGuGCugCU----UUGCGGGUGGAGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 47388 | 0.67 | 0.647639 |
Target: 5'- gCGCCACGGCGAcGCGgUCCugCgacgucgUCAAg -3' miRNA: 3'- -GCGGUGCUGCUuUGC-GGGugGa------GGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 51427 | 0.68 | 0.541768 |
Target: 5'- aCGCCACGACGu-ACGCC-ACCaucgUCAAg -3' miRNA: 3'- -GCGGUGCUGCuuUGCGGgUGGa---GGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 31317 | 0.68 | 0.541768 |
Target: 5'- uCGCCugGugGucGCaGCCUACggCUCCAAu -3' miRNA: 3'- -GCGGugCugCuuUG-CGGGUG--GAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 50845 | 0.69 | 0.521156 |
Target: 5'- uCGCCGaagaGGUGAAGCGCCuCGCCgCCGAg -3' miRNA: 3'- -GCGGUg---CUGCUUUGCGG-GUGGaGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 47954 | 0.69 | 0.521156 |
Target: 5'- uCGCCAUc-CGAucuACGCCUACUUCCGg -3' miRNA: 3'- -GCGGUGcuGCUu--UGCGGGUGGAGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 900 | 0.7 | 0.461365 |
Target: 5'- aGCCGCccu--GGCGUCCGCCUCCAu -3' miRNA: 3'- gCGGUGcugcuUUGCGGGUGGAGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 30816 | 0.69 | 0.500857 |
Target: 5'- aCGCCACGGCcu-GgGCCUACCUgcCCGGa -3' miRNA: 3'- -GCGGUGCUGcuuUgCGGGUGGA--GGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 23652 | 0.69 | 0.500857 |
Target: 5'- aGCCGgGugagcccauCGAGcuggccuccuacGCGCCCGCCUCCGc -3' miRNA: 3'- gCGGUgCu--------GCUU------------UGCGGGUGGAGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 12468 | 0.69 | 0.500857 |
Target: 5'- gGCCACGAgCGGuuCGUaCACCUUCAAg -3' miRNA: 3'- gCGGUGCU-GCUuuGCGgGUGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 43804 | 0.68 | 0.552177 |
Target: 5'- -uCCACGAgGuccGCGCCCACCcCCGc -3' miRNA: 3'- gcGGUGCUgCuu-UGCGGGUGGaGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 7256 | 0.68 | 0.562645 |
Target: 5'- -uCCACGACGcgGcCGUCCACCUCg-- -3' miRNA: 3'- gcGGUGCUGCuuU-GCGGGUGGAGguu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 7292 | 0.67 | 0.646572 |
Target: 5'- cCGCCuGCGACGAgcugcacgccagcGACGuUCCACCcCCGg -3' miRNA: 3'- -GCGG-UGCUGCU-------------UUGC-GGGUGGaGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 23357 | 0.67 | 0.636968 |
Target: 5'- gCGCC-CGAgGugGucaaccuccUGCCCGCCUCCAc -3' miRNA: 3'- -GCGGuGCUgCuuU---------GCGGGUGGAGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 22276 | 0.69 | 0.521156 |
Target: 5'- gCGUgGCGGCGuGGGCGCCCugC-CCGu -3' miRNA: 3'- -GCGgUGCUGC-UUUGCGGGugGaGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 71258 | 0.71 | 0.387706 |
Target: 5'- aGCCAgCGugGAAAuUGCCCGaCUCCAGu -3' miRNA: 3'- gCGGU-GCugCUUU-GCGGGUgGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 41751 | 0.71 | 0.396485 |
Target: 5'- aCGaCCGCGACGGGAaccuccUGCaCGCCUCCAGg -3' miRNA: 3'- -GC-GGUGCUGCUUU------GCGgGUGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 52556 | 0.71 | 0.405392 |
Target: 5'- aCGCUAUcgcgGACGAGugGUCC-CCUCCGu -3' miRNA: 3'- -GCGGUG----CUGCUUugCGGGuGGAGGUu -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 16377 | 0.7 | 0.432852 |
Target: 5'- gCGCCAaGugGGuugccuCGgCCACCUCCAAg -3' miRNA: 3'- -GCGGUgCugCUuu----GCgGGUGGAGGUU- -5' |
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18460 | 5' | -57.2 | NC_004681.1 | + | 41799 | 0.7 | 0.432852 |
Target: 5'- gCGCCGCaGugGaAGACGCC-GCCUCCc- -3' miRNA: 3'- -GCGGUG-CugC-UUUGCGGgUGGAGGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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