miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18461 3' -58.7 NC_004681.1 + 22409 0.66 0.593377
Target:  5'- -cCGGCCGCgGACGGcAACCcUCC-GCAc -3'
miRNA:   3'- auGCUGGCG-CUGCCcUUGG-AGGaCGU- -5'
18461 3' -58.7 NC_004681.1 + 8807 0.66 0.593377
Target:  5'- aGCGACCGCGGCGGcguUgUUgUGCGc -3'
miRNA:   3'- aUGCUGGCGCUGCCcuuGgAGgACGU- -5'
18461 3' -58.7 NC_004681.1 + 8910 0.66 0.597579
Target:  5'- -cUGGCUgGCGGCGGGuaccccggcgucaacGGCCUgCUGCAg -3'
miRNA:   3'- auGCUGG-CGCUGCCC---------------UUGGAgGACGU- -5'
18461 3' -58.7 NC_004681.1 + 22738 0.66 0.614425
Target:  5'- cACGGCCGCcacuCGGGugAACCUCgaGUg -3'
miRNA:   3'- aUGCUGGCGcu--GCCC--UUGGAGgaCGu -5'
18461 3' -58.7 NC_004681.1 + 7463 0.66 0.614425
Target:  5'- -uCGGCCGCGggcuugGCGGGAGgCUUCgccGCGg -3'
miRNA:   3'- auGCUGGCGC------UGCCCUUgGAGGa--CGU- -5'
18461 3' -58.7 NC_004681.1 + 16398 0.66 0.635529
Target:  5'- -cCGGCCGCGGggaugcccuCGGGGAgCUgguagcCCUGCGc -3'
miRNA:   3'- auGCUGGCGCU---------GCCCUUgGA------GGACGU- -5'
18461 3' -58.7 NC_004681.1 + 46716 0.66 0.635529
Target:  5'- gGCGugUGCGggGCGGGGuCCUCg-GCGa -3'
miRNA:   3'- aUGCugGCGC--UGCCCUuGGAGgaCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.