Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18461 | 3' | -58.7 | NC_004681.1 | + | 3066 | 0.67 | 0.531187 |
Target: 5'- gAUGGCCGCGAauaucuCGGGGuCCUCgCUGg- -3' miRNA: 3'- aUGCUGGCGCU------GCCCUuGGAG-GACgu -5' |
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18461 | 3' | -58.7 | NC_004681.1 | + | 7463 | 0.66 | 0.614425 |
Target: 5'- -uCGGCCGCGggcuugGCGGGAGgCUUCgccGCGg -3' miRNA: 3'- auGCUGGCGC------UGCCCUUgGAGGa--CGU- -5' |
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18461 | 3' | -58.7 | NC_004681.1 | + | 8807 | 0.66 | 0.593377 |
Target: 5'- aGCGACCGCGGCGGcguUgUUgUGCGc -3' miRNA: 3'- aUGCUGGCGCUGCCcuuGgAGgACGU- -5' |
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18461 | 3' | -58.7 | NC_004681.1 | + | 8910 | 0.66 | 0.597579 |
Target: 5'- -cUGGCUgGCGGCGGGuaccccggcgucaacGGCCUgCUGCAg -3' miRNA: 3'- auGCUGG-CGCUGCCC---------------UUGGAgGACGU- -5' |
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18461 | 3' | -58.7 | NC_004681.1 | + | 9229 | 0.69 | 0.442974 |
Target: 5'- gAUGAacccgCGCGACuGGGAgCUCCUGCGc -3' miRNA: 3'- aUGCUg----GCGCUGcCCUUgGAGGACGU- -5' |
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18461 | 3' | -58.7 | NC_004681.1 | + | 10758 | 0.69 | 0.452381 |
Target: 5'- gACGGCCGCGGgcacCGGGGGCg-CCagGCAg -3' miRNA: 3'- aUGCUGGCGCU----GCCCUUGgaGGa-CGU- -5' |
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18461 | 3' | -58.7 | NC_004681.1 | + | 16252 | 0.69 | 0.442974 |
Target: 5'- cGCGAUgaGCGACGGGAugGCCgCCaGCGc -3' miRNA: 3'- aUGCUGg-CGCUGCCCU--UGGaGGaCGU- -5' |
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18461 | 3' | -58.7 | NC_004681.1 | + | 16398 | 0.66 | 0.635529 |
Target: 5'- -cCGGCCGCGGggaugcccuCGGGGAgCUgguagcCCUGCGc -3' miRNA: 3'- auGCUGGCGCU---------GCCCUUgGA------GGACGU- -5' |
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18461 | 3' | -58.7 | NC_004681.1 | + | 18395 | 0.72 | 0.280817 |
Target: 5'- gGCGGCCGCGGCGGcaaacGCCUUC-GCAc -3' miRNA: 3'- aUGCUGGCGCUGCCcu---UGGAGGaCGU- -5' |
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18461 | 3' | -58.7 | NC_004681.1 | + | 19024 | 0.73 | 0.242329 |
Target: 5'- cUGCGcucCCGCGACGGGAGCCUggggaCCgGCc -3' miRNA: 3'- -AUGCu--GGCGCUGCCCUUGGA-----GGaCGu -5' |
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18461 | 3' | -58.7 | NC_004681.1 | + | 22409 | 0.66 | 0.593377 |
Target: 5'- -cCGGCCGCgGACGGcAACCcUCC-GCAc -3' miRNA: 3'- auGCUGGCG-CUGCCcUUGG-AGGaCGU- -5' |
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18461 | 3' | -58.7 | NC_004681.1 | + | 22738 | 0.66 | 0.614425 |
Target: 5'- cACGGCCGCcacuCGGGugAACCUCgaGUg -3' miRNA: 3'- aUGCUGGCGcu--GCCC--UUGGAGgaCGu -5' |
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18461 | 3' | -58.7 | NC_004681.1 | + | 23642 | 0.67 | 0.535269 |
Target: 5'- gACGACgGCGAgcCGGGugagcccaucgagcuGGCCUCCUacGCGc -3' miRNA: 3'- aUGCUGgCGCU--GCCC---------------UUGGAGGA--CGU- -5' |
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18461 | 3' | -58.7 | NC_004681.1 | + | 24908 | 0.68 | 0.514978 |
Target: 5'- -uCGACCGCGuuggcccaugcgggcAUGGGAAUUUCCgugGCGc -3' miRNA: 3'- auGCUGGCGC---------------UGCCCUUGGAGGa--CGU- -5' |
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18461 | 3' | -58.7 | NC_004681.1 | + | 30114 | 0.68 | 0.47831 |
Target: 5'- gACGGuuGCGACGaguuugcguaacauGGuguuGCCUCCUGUg -3' miRNA: 3'- aUGCUggCGCUGC--------------CCu---UGGAGGACGu -5' |
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18461 | 3' | -58.7 | NC_004681.1 | + | 30756 | 0.67 | 0.56205 |
Target: 5'- -uUGACCGCGgcguccGCGGGAAUCUCgCUcCAg -3' miRNA: 3'- auGCUGGCGC------UGCCCUUGGAG-GAcGU- -5' |
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18461 | 3' | -58.7 | NC_004681.1 | + | 31908 | 0.69 | 0.442974 |
Target: 5'- gGCGGCCGCcaucGCGGGccucaucccGACCucaacaUCCUGCAc -3' miRNA: 3'- aUGCUGGCGc---UGCCC---------UUGG------AGGACGU- -5' |
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18461 | 3' | -58.7 | NC_004681.1 | + | 33753 | 0.73 | 0.254646 |
Target: 5'- aGCGGCCgagcGCGGCuGGGAGCUUCC-GCAc -3' miRNA: 3'- aUGCUGG----CGCUG-CCCUUGGAGGaCGU- -5' |
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18461 | 3' | -58.7 | NC_004681.1 | + | 41749 | 1.06 | 0.001123 |
Target: 5'- cUACGACCGCGACGGGAACCUCCUGCAc -3' miRNA: 3'- -AUGCUGGCGCUGCCCUUGGAGGACGU- -5' |
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18461 | 3' | -58.7 | NC_004681.1 | + | 45161 | 0.69 | 0.415432 |
Target: 5'- -uCGACCGCGGCGG-AugCUUCgGCGu -3' miRNA: 3'- auGCUGGCGCUGCCcUugGAGGaCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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