Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18461 | 3' | -58.7 | NC_004681.1 | + | 10758 | 0.69 | 0.452381 |
Target: 5'- gACGGCCGCGGgcacCGGGGGCg-CCagGCAg -3' miRNA: 3'- aUGCUGGCGCU----GCCCUUGgaGGa-CGU- -5' |
|||||||
18461 | 3' | -58.7 | NC_004681.1 | + | 16252 | 0.69 | 0.442974 |
Target: 5'- cGCGAUgaGCGACGGGAugGCCgCCaGCGc -3' miRNA: 3'- aUGCUGg-CGCUGCCCU--UGGaGGaCGU- -5' |
|||||||
18461 | 3' | -58.7 | NC_004681.1 | + | 51987 | 0.69 | 0.442039 |
Target: 5'- cUGCGGCCaugaucuGCGagaGCGGGGACCaggugCCUGCc -3' miRNA: 3'- -AUGCUGG-------CGC---UGCCCUUGGa----GGACGu -5' |
|||||||
18461 | 3' | -58.7 | NC_004681.1 | + | 45161 | 0.69 | 0.415432 |
Target: 5'- -uCGACCGCGGCGG-AugCUUCgGCGu -3' miRNA: 3'- auGCUGGCGCUGCCcUugGAGGaCGU- -5' |
|||||||
18461 | 3' | -58.7 | NC_004681.1 | + | 61850 | 0.72 | 0.301815 |
Target: 5'- gGCGGCCGCGgucugguggcgcGCGaGGGcgGCCUCCUuGCGg -3' miRNA: 3'- aUGCUGGCGC------------UGC-CCU--UGGAGGA-CGU- -5' |
|||||||
18461 | 3' | -58.7 | NC_004681.1 | + | 19024 | 0.73 | 0.242329 |
Target: 5'- cUGCGcucCCGCGACGGGAGCCUggggaCCgGCc -3' miRNA: 3'- -AUGCu--GGCGCUGCCCUUGGA-----GGaCGu -5' |
|||||||
18461 | 3' | -58.7 | NC_004681.1 | + | 46716 | 0.66 | 0.635529 |
Target: 5'- gGCGugUGCGggGCGGGGuCCUCg-GCGa -3' miRNA: 3'- aUGCugGCGC--UGCCCUuGGAGgaCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home