Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18462 | 3' | -57.4 | NC_004681.1 | + | 13384 | 0.66 | 0.69009 |
Target: 5'- cGACagGGCGCccucgGACUcgaUGGCCUggACGCGg -3' miRNA: 3'- aUUGg-CCGCGa----CUGG---ACUGGA--UGCGC- -5' |
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18462 | 3' | -57.4 | NC_004681.1 | + | 14801 | 0.66 | 0.679531 |
Target: 5'- aGGCUGGCGCccagcUGGCCcGuACCgaggGCGUGg -3' miRNA: 3'- aUUGGCCGCG-----ACUGGaC-UGGa---UGCGC- -5' |
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18462 | 3' | -57.4 | NC_004681.1 | + | 42052 | 0.66 | 0.668929 |
Target: 5'- aGugCaGCGCUccagucagccaACCUGGCCUACGCc -3' miRNA: 3'- aUugGcCGCGAc----------UGGACUGGAUGCGc -5' |
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18462 | 3' | -57.4 | NC_004681.1 | + | 55803 | 0.66 | 0.668929 |
Target: 5'- aGAgCGGCuGCUGACggucgaUGACCUcaagGCGCu -3' miRNA: 3'- aUUgGCCG-CGACUGg-----ACUGGA----UGCGc -5' |
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18462 | 3' | -57.4 | NC_004681.1 | + | 14411 | 0.66 | 0.667867 |
Target: 5'- uUGGCCcGCGCcucggcGACCUGAagcucacCCUGCGCc -3' miRNA: 3'- -AUUGGcCGCGa-----CUGGACU-------GGAUGCGc -5' |
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18462 | 3' | -57.4 | NC_004681.1 | + | 28035 | 0.66 | 0.647639 |
Target: 5'- aGACCgacGGCGCUGGCgCUGGCggucgAgGCGg -3' miRNA: 3'- aUUGG---CCGCGACUG-GACUGga---UgCGC- -5' |
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18462 | 3' | -57.4 | NC_004681.1 | + | 40071 | 0.67 | 0.626294 |
Target: 5'- gAGCCGGUgaGUUGACCcgGcGCCgACGCGc -3' miRNA: 3'- aUUGGCCG--CGACUGGa-C-UGGaUGCGC- -5' |
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18462 | 3' | -57.4 | NC_004681.1 | + | 29587 | 0.67 | 0.626294 |
Target: 5'- gUGGgCGGCaacGugCUGGCCUACGCu -3' miRNA: 3'- -AUUgGCCGcgaCugGACUGGAUGCGc -5' |
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18462 | 3' | -57.4 | NC_004681.1 | + | 26316 | 0.67 | 0.623092 |
Target: 5'- -cGCCGGgucgauugugucgaCGCUGACC-GACCUGCa-- -3' miRNA: 3'- auUGGCC--------------GCGACUGGaCUGGAUGcgc -5' |
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18462 | 3' | -57.4 | NC_004681.1 | + | 60053 | 0.67 | 0.604969 |
Target: 5'- -cACCuGGCaccgGCUGACCgUGGCCaucgaggACGCGg -3' miRNA: 3'- auUGG-CCG----CGACUGG-ACUGGa------UGCGC- -5' |
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18462 | 3' | -57.4 | NC_004681.1 | + | 50252 | 0.67 | 0.604969 |
Target: 5'- gGAUCaaGGCGCUGuCCUGGuCCcGCGCc -3' miRNA: 3'- aUUGG--CCGCGACuGGACU-GGaUGCGc -5' |
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18462 | 3' | -57.4 | NC_004681.1 | + | 12921 | 0.67 | 0.604969 |
Target: 5'- -uACCGGCGCcaaUGGCCguacGugCUGCaGCu -3' miRNA: 3'- auUGGCCGCG---ACUGGa---CugGAUG-CGc -5' |
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18462 | 3' | -57.4 | NC_004681.1 | + | 24103 | 0.67 | 0.594335 |
Target: 5'- --uCCGGCGCcaGCCUGGCggACGCc -3' miRNA: 3'- auuGGCCGCGacUGGACUGgaUGCGc -5' |
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18462 | 3' | -57.4 | NC_004681.1 | + | 16852 | 0.68 | 0.573165 |
Target: 5'- cGACCGGCacaaGCUGGCCgagaagcGugCU-CGCGu -3' miRNA: 3'- aUUGGCCG----CGACUGGa------CugGAuGCGC- -5' |
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18462 | 3' | -57.4 | NC_004681.1 | + | 40168 | 0.68 | 0.573165 |
Target: 5'- cAGCCugucgaucugGGUGCUGGCgUcGGCCUGCGgGa -3' miRNA: 3'- aUUGG----------CCGCGACUGgA-CUGGAUGCgC- -5' |
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18462 | 3' | -57.4 | NC_004681.1 | + | 33381 | 0.68 | 0.545924 |
Target: 5'- cGACCGGCGUcgaUGACacccggcagcggaaCUGcgaggacccgcaucACCUGCGCGa -3' miRNA: 3'- aUUGGCCGCG---ACUG--------------GAC--------------UGGAUGCGC- -5' |
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18462 | 3' | -57.4 | NC_004681.1 | + | 49352 | 0.69 | 0.500857 |
Target: 5'- -cGCgGGCGCUGACCacugGGCgcacaccuuCUGCGUGa -3' miRNA: 3'- auUGgCCGCGACUGGa---CUG---------GAUGCGC- -5' |
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18462 | 3' | -57.4 | NC_004681.1 | + | 3046 | 0.69 | 0.489842 |
Target: 5'- ---gCGGCGCcaagGGCCUGGuggcaguCCUGCGCa -3' miRNA: 3'- auugGCCGCGa---CUGGACU-------GGAUGCGc -5' |
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18462 | 3' | -57.4 | NC_004681.1 | + | 735 | 0.69 | 0.480914 |
Target: 5'- gGAUCGGCGUcGAUCaccgGGCCgaagGCGCGg -3' miRNA: 3'- aUUGGCCGCGaCUGGa---CUGGa---UGCGC- -5' |
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18462 | 3' | -57.4 | NC_004681.1 | + | 28727 | 0.69 | 0.471088 |
Target: 5'- gUGACCGGCGUaacUGGCaucACCUACGaCGg -3' miRNA: 3'- -AUUGGCCGCG---ACUGgacUGGAUGC-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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