miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18462 3' -57.4 NC_004681.1 + 12921 0.67 0.604969
Target:  5'- -uACCGGCGCcaaUGGCCguacGugCUGCaGCu -3'
miRNA:   3'- auUGGCCGCG---ACUGGa---CugGAUG-CGc -5'
18462 3' -57.4 NC_004681.1 + 40168 0.68 0.573165
Target:  5'- cAGCCugucgaucugGGUGCUGGCgUcGGCCUGCGgGa -3'
miRNA:   3'- aUUGG----------CCGCGACUGgA-CUGGAUGCgC- -5'
18462 3' -57.4 NC_004681.1 + 33381 0.68 0.545924
Target:  5'- cGACCGGCGUcgaUGACacccggcagcggaaCUGcgaggacccgcaucACCUGCGCGa -3'
miRNA:   3'- aUUGGCCGCG---ACUG--------------GAC--------------UGGAUGCGC- -5'
18462 3' -57.4 NC_004681.1 + 735 0.69 0.480914
Target:  5'- gGAUCGGCGUcGAUCaccgGGCCgaagGCGCGg -3'
miRNA:   3'- aUUGGCCGCGaCUGGa---CUGGa---UGCGC- -5'
18462 3' -57.4 NC_004681.1 + 22190 0.69 0.471088
Target:  5'- gAugCGGCGCUGcaACUUGGCCacaggggauuccUGCGCc -3'
miRNA:   3'- aUugGCCGCGAC--UGGACUGG------------AUGCGc -5'
18462 3' -57.4 NC_004681.1 + 46541 0.69 0.471088
Target:  5'- -uACCGGaGCaGGCCgcggGaACCUGCGCGg -3'
miRNA:   3'- auUGGCCgCGaCUGGa---C-UGGAUGCGC- -5'
18462 3' -57.4 NC_004681.1 + 17905 0.71 0.396485
Target:  5'- cGGCCGccGCGUUGAUgUcGGCCUGCGUGg -3'
miRNA:   3'- aUUGGC--CGCGACUGgA-CUGGAUGCGC- -5'
18462 3' -57.4 NC_004681.1 + 29806 0.71 0.387706
Target:  5'- cAGCUGcGCGC-GGCCggucGACCUACGCc -3'
miRNA:   3'- aUUGGC-CGCGaCUGGa---CUGGAUGCGc -5'
18462 3' -57.4 NC_004681.1 + 62350 0.72 0.314631
Target:  5'- --cCCGGCGCggugGACgaaGACCUugGCGa -3'
miRNA:   3'- auuGGCCGCGa---CUGga-CUGGAugCGC- -5'
18462 3' -57.4 NC_004681.1 + 13384 0.66 0.69009
Target:  5'- cGACagGGCGCccucgGACUcgaUGGCCUggACGCGg -3'
miRNA:   3'- aUUGg-CCGCGa----CUGG---ACUGGA--UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.