miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18462 5' -56.8 NC_004681.1 + 40076 0.66 0.755664
Target:  5'- --aGGCCgAGCCggUGaguugaccCGGCGCCGACg -3'
miRNA:   3'- gagCCGG-UCGGa-ACa-------GCUGCGGUUGg -5'
18462 5' -56.8 NC_004681.1 + 8392 0.66 0.755664
Target:  5'- --aGGCCGuCCUUGgCGGCGuCCGcGCCa -3'
miRNA:   3'- gagCCGGUcGGAACaGCUGC-GGU-UGG- -5'
18462 5' -56.8 NC_004681.1 + 2016 0.66 0.755664
Target:  5'- -cCGGCCgcGGCCaggugGUCGugGagggCGGCCg -3'
miRNA:   3'- gaGCCGG--UCGGaa---CAGCugCg---GUUGG- -5'
18462 5' -56.8 NC_004681.1 + 58561 0.66 0.755664
Target:  5'- cCUgGGCCAGCgUcaagcUCGAUGCggaGACCg -3'
miRNA:   3'- -GAgCCGGUCGgAac---AGCUGCGg--UUGG- -5'
18462 5' -56.8 NC_004681.1 + 41790 0.66 0.755664
Target:  5'- -aCGGCCuucgcGCCgcagUGgaaGACGCC-GCCu -3'
miRNA:   3'- gaGCCGGu----CGGa---ACag-CUGCGGuUGG- -5'
18462 5' -56.8 NC_004681.1 + 12816 0.66 0.755664
Target:  5'- cCUCaGCC-GUCUcagUGgcacccUCGAUGCCAGCCu -3'
miRNA:   3'- -GAGcCGGuCGGA---AC------AGCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 3724 0.66 0.755664
Target:  5'- -gCGGCCuGCuuCUUGUCGcgggcgACGCCGuagauuucACCg -3'
miRNA:   3'- gaGCCGGuCG--GAACAGC------UGCGGU--------UGG- -5'
18462 5' -56.8 NC_004681.1 + 17411 0.66 0.745672
Target:  5'- -aCGGCC-GCCccacgggUGGCGCCAACa -3'
miRNA:   3'- gaGCCGGuCGGaaca---GCUGCGGUUGg -5'
18462 5' -56.8 NC_004681.1 + 54522 0.66 0.745672
Target:  5'- uCUCGGUcgacgCAGCUcUGgacgucgcgcUUGACGUCGACCa -3'
miRNA:   3'- -GAGCCG-----GUCGGaAC----------AGCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 57589 0.66 0.745672
Target:  5'- -gUGGCCAGCCUgGgaacCGucCGCC-GCCu -3'
miRNA:   3'- gaGCCGGUCGGAaCa---GCu-GCGGuUGG- -5'
18462 5' -56.8 NC_004681.1 + 34007 0.66 0.745672
Target:  5'- --aGGUguGCCcgucGUCGugGUCGACUg -3'
miRNA:   3'- gagCCGguCGGaa--CAGCugCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 33285 0.66 0.745672
Target:  5'- -aCGGCCAgGCCgagcaUGUCGugGaacugCAGCUu -3'
miRNA:   3'- gaGCCGGU-CGGa----ACAGCugCg----GUUGG- -5'
18462 5' -56.8 NC_004681.1 + 34171 0.66 0.744667
Target:  5'- -gCGGCCAGCUUcucaaucUGacUCGGgGCgAACCc -3'
miRNA:   3'- gaGCCGGUCGGA-------AC--AGCUgCGgUUGG- -5'
18462 5' -56.8 NC_004681.1 + 69004 0.66 0.742653
Target:  5'- -gCGGCCGugacgauggucagcGCCUcGaUGGCGUCGGCCg -3'
miRNA:   3'- gaGCCGGU--------------CGGAaCaGCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 29597 0.66 0.739625
Target:  5'- -aCGuGCUGGCCUacgcucUGcugaacucugauggcUCGACGUCGACCa -3'
miRNA:   3'- gaGC-CGGUCGGA------AC---------------AGCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 546 0.66 0.735574
Target:  5'- aCUCGGCCAGgUUg---GACGcCCAGCg -3'
miRNA:   3'- -GAGCCGGUCgGAacagCUGC-GGUUGg -5'
18462 5' -56.8 NC_004681.1 + 68889 0.66 0.735574
Target:  5'- -gCGGCCGacGCCaucgaGGCGCUGACCa -3'
miRNA:   3'- gaGCCGGU--CGGaacagCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 12249 0.66 0.725378
Target:  5'- gUCGGgUGGCCcggUGcUGugGCCGACUc -3'
miRNA:   3'- gAGCCgGUCGGa--ACaGCugCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 5146 0.66 0.715096
Target:  5'- --aGGUUGGCCUUGgCGACGuUCAACa -3'
miRNA:   3'- gagCCGGUCGGAACaGCUGC-GGUUGg -5'
18462 5' -56.8 NC_004681.1 + 40542 0.66 0.715096
Target:  5'- aUCGGCC-GCCUcaagGGCGCCGAgguCCa -3'
miRNA:   3'- gAGCCGGuCGGAacagCUGCGGUU---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.