Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18462 | 5' | -56.8 | NC_004681.1 | + | 546 | 0.66 | 0.735574 |
Target: 5'- aCUCGGCCAGgUUg---GACGcCCAGCg -3' miRNA: 3'- -GAGCCGGUCgGAacagCUGC-GGUUGg -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 58561 | 0.66 | 0.755664 |
Target: 5'- cCUgGGCCAGCgUcaagcUCGAUGCggaGACCg -3' miRNA: 3'- -GAgCCGGUCGgAac---AGCUGCGg--UUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 22076 | 0.67 | 0.661688 |
Target: 5'- gUCGGUgUAGagCUUGUCGAgcaucgcaaaggaCGCCGGCCg -3' miRNA: 3'- gAGCCG-GUCg-GAACAGCU-------------GCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 32656 | 0.67 | 0.662746 |
Target: 5'- cCUCGGCCc-CCUUcagggcGUCGAagaUGCCAGCg -3' miRNA: 3'- -GAGCCGGucGGAA------CAGCU---GCGGUUGg -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 4626 | 0.67 | 0.694314 |
Target: 5'- uUUGcGUCAGCCUcgaUGUCGuCGUaGACCa -3' miRNA: 3'- gAGC-CGGUCGGA---ACAGCuGCGgUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 56212 | 0.67 | 0.694314 |
Target: 5'- gUCGG-UGGCCUggacCGGCGUCGACCc -3' miRNA: 3'- gAGCCgGUCGGAaca-GCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 42076 | 0.67 | 0.683834 |
Target: 5'- -cUGGCCuacGCCagacUGuUCGGgGCCAACCu -3' miRNA: 3'- gaGCCGGu--CGGa---AC-AGCUgCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 27158 | 0.67 | 0.652157 |
Target: 5'- gUUGGUUguaGGUCcc-UCGACGCCGACCa -3' miRNA: 3'- gAGCCGG---UCGGaacAGCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 8574 | 0.67 | 0.673308 |
Target: 5'- gCUCaGCCgcAGCCgUGcCGGgGUCAGCCg -3' miRNA: 3'- -GAGcCGG--UCGGaACaGCUgCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 12163 | 0.67 | 0.652157 |
Target: 5'- aCUCGGCCucguccaugcGGCC--GUCaACGCCGAUg -3' miRNA: 3'- -GAGCCGG----------UCGGaaCAGcUGCGGUUGg -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 51644 | 0.67 | 0.662746 |
Target: 5'- -cUGGCCAGCUUgggCGaugagcGCGUCGACCu -3' miRNA: 3'- gaGCCGGUCGGAacaGC------UGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 60686 | 0.67 | 0.694314 |
Target: 5'- -gCGG-CGGCCUcGUCGAgcaccacguuCGUCGGCCa -3' miRNA: 3'- gaGCCgGUCGGAaCAGCU----------GCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 29683 | 0.67 | 0.694314 |
Target: 5'- --aGGCCAGCac-GUUGcCGCCcACCu -3' miRNA: 3'- gagCCGGUCGgaaCAGCuGCGGuUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 30786 | 0.67 | 0.641551 |
Target: 5'- -aCGGCCGcGCCaugacUGUCGAcaacuccuaCGCCAcgGCCu -3' miRNA: 3'- gaGCCGGU-CGGa----ACAGCU---------GCGGU--UGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 42413 | 0.67 | 0.652157 |
Target: 5'- -aCGGCgCccccGUCUcGUCGGCGCgCAGCCu -3' miRNA: 3'- gaGCCG-Gu---CGGAaCAGCUGCG-GUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 58629 | 0.67 | 0.662746 |
Target: 5'- aCUCGGCC--CCUcaaggUGUCcuGCGCCAcgGCCg -3' miRNA: 3'- -GAGCCGGucGGA-----ACAGc-UGCGGU--UGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 40459 | 0.67 | 0.662746 |
Target: 5'- -gCGGCCGaugacauugaacGCCgcgGcCGACGCC-GCCa -3' miRNA: 3'- gaGCCGGU------------CGGaa-CaGCUGCGGuUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 55002 | 0.67 | 0.673308 |
Target: 5'- gCUCGGCCugaaguGCCUucagGUCG-CGCCcggggAACUu -3' miRNA: 3'- -GAGCCGGu-----CGGAa---CAGCuGCGG-----UUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 39990 | 0.67 | 0.673308 |
Target: 5'- -cCGGCuCGGCCUUGaacCaGCGCCGcuugGCCu -3' miRNA: 3'- gaGCCG-GUCGGAACa--GcUGCGGU----UGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 32001 | 0.67 | 0.68068 |
Target: 5'- aUCGGCUcGCUga-UCGGCGCCGcgggugucggcacgGCCg -3' miRNA: 3'- gAGCCGGuCGGaacAGCUGCGGU--------------UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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