Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18462 | 5' | -56.8 | NC_004681.1 | + | 42005 | 1.11 | 0.0008 |
Target: 5'- uCUCGGCCAGCCUUGUCGACGCCAACCu -3' miRNA: 3'- -GAGCCGGUCGGAACAGCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 24088 | 0.78 | 0.175069 |
Target: 5'- gUgGGCCAGCaagGUucCGGCGCCAGCCu -3' miRNA: 3'- gAgCCGGUCGgaaCA--GCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 26304 | 0.74 | 0.31183 |
Target: 5'- -gUGGCCGcacugcGCCgggucgauugUGUCGACGCUGACCg -3' miRNA: 3'- gaGCCGGU------CGGa---------ACAGCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 6505 | 0.73 | 0.342585 |
Target: 5'- -cUGGCCGGUCgcuUCGGCGCCGggGCCu -3' miRNA: 3'- gaGCCGGUCGGaacAGCUGCGGU--UGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 10495 | 0.73 | 0.350608 |
Target: 5'- -cUGGUCAGCCUUGgacagCGAggUGCCAGCg -3' miRNA: 3'- gaGCCGGUCGGAACa----GCU--GCGGUUGg -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 8974 | 0.73 | 0.334696 |
Target: 5'- cCUCGGCCucucGCUgu-UCGGCGCCAccucgGCCa -3' miRNA: 3'- -GAGCCGGu---CGGaacAGCUGCGGU-----UGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 42113 | 0.73 | 0.319318 |
Target: 5'- --gGGCCAaCUUUGaCGAUGCCAACCu -3' miRNA: 3'- gagCCGGUcGGAACaGCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 17906 | 0.72 | 0.375469 |
Target: 5'- -gCGGCC-GCCgcGUUGAUGUCGGCCu -3' miRNA: 3'- gaGCCGGuCGGaaCAGCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 32116 | 0.72 | 0.375469 |
Target: 5'- -cCGGCCGuGCCgacacccgCGGCGCCGAUCa -3' miRNA: 3'- gaGCCGGU-CGGaaca----GCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 7801 | 0.72 | 0.370403 |
Target: 5'- aCUUGGauuCAGCCUUGUUGACGgacuuggucgacuuuUCGACCa -3' miRNA: 3'- -GAGCCg--GUCGGAACAGCUGC---------------GGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 2458 | 0.72 | 0.410421 |
Target: 5'- cCUCGaagaauGCCugGGCCUUGUUGGCGCgCGGCa -3' miRNA: 3'- -GAGC------CGG--UCGGAACAGCUGCG-GUUGg -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 18467 | 0.72 | 0.384017 |
Target: 5'- -cUGGCCuGCCaUGUCGaugGCGCC-ACCg -3' miRNA: 3'- gaGCCGGuCGGaACAGC---UGCGGuUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 14896 | 0.72 | 0.367051 |
Target: 5'- --gGGCCAGCUg----GGCGCCAGCCu -3' miRNA: 3'- gagCCGGUCGGaacagCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 5177 | 0.72 | 0.410421 |
Target: 5'- -aCGGUCAGaCCcUGUCcGCGCCcGCCa -3' miRNA: 3'- gaGCCGGUC-GGaACAGcUGCGGuUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 21256 | 0.72 | 0.401495 |
Target: 5'- -aCGGCCAGCCUguggcucccUGgCGACccCCAGCCc -3' miRNA: 3'- gaGCCGGUCGGA---------ACaGCUGc-GGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 48923 | 0.71 | 0.456836 |
Target: 5'- -gUGGaacCCGGaCUUGUCGACGgCAACCa -3' miRNA: 3'- gaGCC---GGUCgGAACAGCUGCgGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 62545 | 0.71 | 0.454925 |
Target: 5'- cCUCGGCCauucggguuuccugGGCggcggagagggcggUGUCGGCGCcCAGCCa -3' miRNA: 3'- -GAGCCGG--------------UCGga------------ACAGCUGCG-GUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 38982 | 0.7 | 0.466455 |
Target: 5'- --aGGCUGGCCUUcuccagUGGCGCCAGCUc -3' miRNA: 3'- gagCCGGUCGGAAca----GCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 66991 | 0.7 | 0.505924 |
Target: 5'- gUCGGCCugcacgcgcGCCUcaUGUCGcAgGCCAugCg -3' miRNA: 3'- gAGCCGGu--------CGGA--ACAGC-UgCGGUugG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 6423 | 0.7 | 0.476177 |
Target: 5'- -cCGGCCAGCaCUccUGUCG-CGUCucugGACCa -3' miRNA: 3'- gaGCCGGUCG-GA--ACAGCuGCGG----UUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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