miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18462 5' -56.8 NC_004681.1 + 66991 0.7 0.505924
Target:  5'- gUCGGCCugcacgcgcGCCUcaUGUCGcAgGCCAugCg -3'
miRNA:   3'- gAGCCGGu--------CGGA--ACAGC-UgCGGUugG- -5'
18462 5' -56.8 NC_004681.1 + 58614 0.69 0.526191
Target:  5'- gCUCGGCCA-CCaguUUGUCGcgcaGCGCCuggacuGCCu -3'
miRNA:   3'- -GAGCCGGUcGG---AACAGC----UGCGGu-----UGG- -5'
18462 5' -56.8 NC_004681.1 + 39198 0.69 0.526191
Target:  5'- cCUCGacgucgaggacGUCAGCCUgGUCGACuGUCAGCUc -3'
miRNA:   3'- -GAGC-----------CGGUCGGAaCAGCUG-CGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 74433 0.69 0.526191
Target:  5'- -gCGGuCCAGCCacGUCGcuuugcgcACGCCAuGCCa -3'
miRNA:   3'- gaGCC-GGUCGGaaCAGC--------UGCGGU-UGG- -5'
18462 5' -56.8 NC_004681.1 + 14654 0.69 0.526191
Target:  5'- -gCGGCCgugguGGCggUGgcggCGAUGCCGACCc -3'
miRNA:   3'- gaGCCGG-----UCGgaACa---GCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 32240 0.69 0.536439
Target:  5'- -gCGGuCCAGCUggucGUUGGCGUgGGCCg -3'
miRNA:   3'- gaGCC-GGUCGGaa--CAGCUGCGgUUGG- -5'
18462 5' -56.8 NC_004681.1 + 57526 0.69 0.536439
Target:  5'- aCUUGGCCAuCCgaGgaagggUGACGCCAGCa -3'
miRNA:   3'- -GAGCCGGUcGGaaCa-----GCUGCGGUUGg -5'
18462 5' -56.8 NC_004681.1 + 16949 0.69 0.536439
Target:  5'- uCUCGGCCAGCUUgugccgGUCGuugauguaGCuCGACUc -3'
miRNA:   3'- -GAGCCGGUCGGAa-----CAGCug------CG-GUUGG- -5'
18462 5' -56.8 NC_004681.1 + 31857 0.69 0.540558
Target:  5'- uUCuuGCCGGUCUggguacuugaucggGUCGGCGCCuGCCa -3'
miRNA:   3'- gAGc-CGGUCGGAa-------------CAGCUGCGGuUGG- -5'
18462 5' -56.8 NC_004681.1 + 39655 0.69 0.543654
Target:  5'- cCUCGGCCGcGCuCUUgauguagcgGUCGAucugacgccgggauUGCCAGCCc -3'
miRNA:   3'- -GAGCCGGU-CG-GAA---------CAGCU--------------GCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 14506 0.69 0.546756
Target:  5'- cCUCGGCC-GCCUgcuUGcgcUUGGCGUCGGCg -3'
miRNA:   3'- -GAGCCGGuCGGA---AC---AGCUGCGGUUGg -5'
18462 5' -56.8 NC_004681.1 + 1393 0.69 0.546756
Target:  5'- gUCGGCCAGCUc-GUCccagacuuccugGGCGCCcuCCg -3'
miRNA:   3'- gAGCCGGUCGGaaCAG------------CUGCGGuuGG- -5'
18462 5' -56.8 NC_004681.1 + 12095 0.69 0.546756
Target:  5'- uUCGGCUugguGGCCUUGUa---GCCAGCg -3'
miRNA:   3'- gAGCCGG----UCGGAACAgcugCGGUUGg -5'
18462 5' -56.8 NC_004681.1 + 60622 0.69 0.557135
Target:  5'- uUCGGCCcGUCUcgGUCGGgaagaugugacCGCCAuuGCCg -3'
miRNA:   3'- gAGCCGGuCGGAa-CAGCU-----------GCGGU--UGG- -5'
18462 5' -56.8 NC_004681.1 + 18484 0.69 0.567569
Target:  5'- -gUGGCCAGCUgaucgguaUCGGCGCCGAg- -3'
miRNA:   3'- gaGCCGGUCGGaac-----AGCUGCGGUUgg -5'
18462 5' -56.8 NC_004681.1 + 50044 0.69 0.578053
Target:  5'- cCUCGGCUAcGUCUc--CGACGCCAucgacuGCCu -3'
miRNA:   3'- -GAGCCGGU-CGGAacaGCUGCGGU------UGG- -5'
18462 5' -56.8 NC_004681.1 + 62855 0.68 0.588578
Target:  5'- -gCGGUCAGCC-UGUCGAC-CUGAUUg -3'
miRNA:   3'- gaGCCGGUCGGaACAGCUGcGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 52535 0.68 0.588578
Target:  5'- aCUUGGCCgaggcAGCCU--UCGACGCUAucGCg -3'
miRNA:   3'- -GAGCCGG-----UCGGAacAGCUGCGGU--UGg -5'
18462 5' -56.8 NC_004681.1 + 628 0.68 0.588578
Target:  5'- -cCGcGCCuucGGCCcggUGaUCGACGCCGAUCc -3'
miRNA:   3'- gaGC-CGG---UCGGa--AC-AGCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 38898 0.68 0.599136
Target:  5'- --aGGCCAGCCUgcUGgCGugGgucaauccauggCCAGCCu -3'
miRNA:   3'- gagCCGGUCGGA--ACaGCugC------------GGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.