Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18462 | 5' | -56.8 | NC_004681.1 | + | 40076 | 0.66 | 0.755664 |
Target: 5'- --aGGCCgAGCCggUGaguugaccCGGCGCCGACg -3' miRNA: 3'- gagCCGG-UCGGa-ACa-------GCUGCGGUUGg -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 8392 | 0.66 | 0.755664 |
Target: 5'- --aGGCCGuCCUUGgCGGCGuCCGcGCCa -3' miRNA: 3'- gagCCGGUcGGAACaGCUGC-GGU-UGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 2016 | 0.66 | 0.755664 |
Target: 5'- -cCGGCCgcGGCCaggugGUCGugGagggCGGCCg -3' miRNA: 3'- gaGCCGG--UCGGaa---CAGCugCg---GUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 58561 | 0.66 | 0.755664 |
Target: 5'- cCUgGGCCAGCgUcaagcUCGAUGCggaGACCg -3' miRNA: 3'- -GAgCCGGUCGgAac---AGCUGCGg--UUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 41790 | 0.66 | 0.755664 |
Target: 5'- -aCGGCCuucgcGCCgcagUGgaaGACGCC-GCCu -3' miRNA: 3'- gaGCCGGu----CGGa---ACag-CUGCGGuUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 12816 | 0.66 | 0.755664 |
Target: 5'- cCUCaGCC-GUCUcagUGgcacccUCGAUGCCAGCCu -3' miRNA: 3'- -GAGcCGGuCGGA---AC------AGCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 3724 | 0.66 | 0.755664 |
Target: 5'- -gCGGCCuGCuuCUUGUCGcgggcgACGCCGuagauuucACCg -3' miRNA: 3'- gaGCCGGuCG--GAACAGC------UGCGGU--------UGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 17411 | 0.66 | 0.745672 |
Target: 5'- -aCGGCC-GCCccacgggUGGCGCCAACa -3' miRNA: 3'- gaGCCGGuCGGaaca---GCUGCGGUUGg -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 54522 | 0.66 | 0.745672 |
Target: 5'- uCUCGGUcgacgCAGCUcUGgacgucgcgcUUGACGUCGACCa -3' miRNA: 3'- -GAGCCG-----GUCGGaAC----------AGCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 57589 | 0.66 | 0.745672 |
Target: 5'- -gUGGCCAGCCUgGgaacCGucCGCC-GCCu -3' miRNA: 3'- gaGCCGGUCGGAaCa---GCu-GCGGuUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 34007 | 0.66 | 0.745672 |
Target: 5'- --aGGUguGCCcgucGUCGugGUCGACUg -3' miRNA: 3'- gagCCGguCGGaa--CAGCugCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 33285 | 0.66 | 0.745672 |
Target: 5'- -aCGGCCAgGCCgagcaUGUCGugGaacugCAGCUu -3' miRNA: 3'- gaGCCGGU-CGGa----ACAGCugCg----GUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 34171 | 0.66 | 0.744667 |
Target: 5'- -gCGGCCAGCUUcucaaucUGacUCGGgGCgAACCc -3' miRNA: 3'- gaGCCGGUCGGA-------AC--AGCUgCGgUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 69004 | 0.66 | 0.742653 |
Target: 5'- -gCGGCCGugacgauggucagcGCCUcGaUGGCGUCGGCCg -3' miRNA: 3'- gaGCCGGU--------------CGGAaCaGCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 29597 | 0.66 | 0.739625 |
Target: 5'- -aCGuGCUGGCCUacgcucUGcugaacucugauggcUCGACGUCGACCa -3' miRNA: 3'- gaGC-CGGUCGGA------AC---------------AGCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 546 | 0.66 | 0.735574 |
Target: 5'- aCUCGGCCAGgUUg---GACGcCCAGCg -3' miRNA: 3'- -GAGCCGGUCgGAacagCUGC-GGUUGg -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 68889 | 0.66 | 0.735574 |
Target: 5'- -gCGGCCGacGCCaucgaGGCGCUGACCa -3' miRNA: 3'- gaGCCGGU--CGGaacagCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 12249 | 0.66 | 0.725378 |
Target: 5'- gUCGGgUGGCCcggUGcUGugGCCGACUc -3' miRNA: 3'- gAGCCgGUCGGa--ACaGCugCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 5146 | 0.66 | 0.715096 |
Target: 5'- --aGGUUGGCCUUGgCGACGuUCAACa -3' miRNA: 3'- gagCCGGUCGGAACaGCUGC-GGUUGg -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 40542 | 0.66 | 0.715096 |
Target: 5'- aUCGGCC-GCCUcaagGGCGCCGAgguCCa -3' miRNA: 3'- gAGCCGGuCGGAacagCUGCGGUU---GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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