miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18462 5' -56.8 NC_004681.1 + 40233 0.66 0.704738
Target:  5'- -gCGGCCuGCC-UGUCccgGGCGgucaCCGACCu -3'
miRNA:   3'- gaGCCGGuCGGaACAG---CUGC----GGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 54277 0.66 0.704738
Target:  5'- -gCGGUugaugacgaCAGCCUUGUUGACGgUGGCg -3'
miRNA:   3'- gaGCCG---------GUCGGAACAGCUGCgGUUGg -5'
18462 5' -56.8 NC_004681.1 + 60686 0.67 0.694314
Target:  5'- -gCGG-CGGCCUcGUCGAgcaccacguuCGUCGGCCa -3'
miRNA:   3'- gaGCCgGUCGGAaCAGCU----------GCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 4626 0.67 0.694314
Target:  5'- uUUGcGUCAGCCUcgaUGUCGuCGUaGACCa -3'
miRNA:   3'- gAGC-CGGUCGGA---ACAGCuGCGgUUGG- -5'
18462 5' -56.8 NC_004681.1 + 29683 0.67 0.694314
Target:  5'- --aGGCCAGCac-GUUGcCGCCcACCu -3'
miRNA:   3'- gagCCGGUCGgaaCAGCuGCGGuUGG- -5'
18462 5' -56.8 NC_004681.1 + 56212 0.67 0.694314
Target:  5'- gUCGG-UGGCCUggacCGGCGUCGACCc -3'
miRNA:   3'- gAGCCgGUCGGAaca-GCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 42076 0.67 0.683834
Target:  5'- -cUGGCCuacGCCagacUGuUCGGgGCCAACCu -3'
miRNA:   3'- gaGCCGGu--CGGa---AC-AGCUgCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 32001 0.67 0.68068
Target:  5'- aUCGGCUcGCUga-UCGGCGCCGcgggugucggcacgGCCg -3'
miRNA:   3'- gAGCCGGuCGGaacAGCUGCGGU--------------UGG- -5'
18462 5' -56.8 NC_004681.1 + 39990 0.67 0.673308
Target:  5'- -cCGGCuCGGCCUUGaacCaGCGCCGcuugGCCu -3'
miRNA:   3'- gaGCCG-GUCGGAACa--GcUGCGGU----UGG- -5'
18462 5' -56.8 NC_004681.1 + 55002 0.67 0.673308
Target:  5'- gCUCGGCCugaaguGCCUucagGUCG-CGCCcggggAACUu -3'
miRNA:   3'- -GAGCCGGu-----CGGAa---CAGCuGCGG-----UUGG- -5'
18462 5' -56.8 NC_004681.1 + 45676 0.67 0.673308
Target:  5'- -cCGGCCA-CCUUGcgggCGAUGUCcACCu -3'
miRNA:   3'- gaGCCGGUcGGAACa---GCUGCGGuUGG- -5'
18462 5' -56.8 NC_004681.1 + 8574 0.67 0.673308
Target:  5'- gCUCaGCCgcAGCCgUGcCGGgGUCAGCCg -3'
miRNA:   3'- -GAGcCGG--UCGGaACaGCUgCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 58629 0.67 0.662746
Target:  5'- aCUCGGCC--CCUcaaggUGUCcuGCGCCAcgGCCg -3'
miRNA:   3'- -GAGCCGGucGGA-----ACAGc-UGCGGU--UGG- -5'
18462 5' -56.8 NC_004681.1 + 32656 0.67 0.662746
Target:  5'- cCUCGGCCc-CCUUcagggcGUCGAagaUGCCAGCg -3'
miRNA:   3'- -GAGCCGGucGGAA------CAGCU---GCGGUUGg -5'
18462 5' -56.8 NC_004681.1 + 51644 0.67 0.662746
Target:  5'- -cUGGCCAGCUUgggCGaugagcGCGUCGACCu -3'
miRNA:   3'- gaGCCGGUCGGAacaGC------UGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 40459 0.67 0.662746
Target:  5'- -gCGGCCGaugacauugaacGCCgcgGcCGACGCC-GCCa -3'
miRNA:   3'- gaGCCGGU------------CGGaa-CaGCUGCGGuUGG- -5'
18462 5' -56.8 NC_004681.1 + 22076 0.67 0.661688
Target:  5'- gUCGGUgUAGagCUUGUCGAgcaucgcaaaggaCGCCGGCCg -3'
miRNA:   3'- gAGCCG-GUCg-GAACAGCU-------------GCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 27158 0.67 0.652157
Target:  5'- gUUGGUUguaGGUCcc-UCGACGCCGACCa -3'
miRNA:   3'- gAGCCGG---UCGGaacAGCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 42413 0.67 0.652157
Target:  5'- -aCGGCgCccccGUCUcGUCGGCGCgCAGCCu -3'
miRNA:   3'- gaGCCG-Gu---CGGAaCAGCUGCG-GUUGG- -5'
18462 5' -56.8 NC_004681.1 + 12163 0.67 0.652157
Target:  5'- aCUCGGCCucguccaugcGGCC--GUCaACGCCGAUg -3'
miRNA:   3'- -GAGCCGG----------UCGGaaCAGcUGCGGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.