miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18462 5' -56.8 NC_004681.1 + 546 0.66 0.735574
Target:  5'- aCUCGGCCAGgUUg---GACGcCCAGCg -3'
miRNA:   3'- -GAGCCGGUCgGAacagCUGC-GGUUGg -5'
18462 5' -56.8 NC_004681.1 + 628 0.68 0.588578
Target:  5'- -cCGcGCCuucGGCCcggUGaUCGACGCCGAUCc -3'
miRNA:   3'- gaGC-CGG---UCGGa--AC-AGCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 1393 0.69 0.546756
Target:  5'- gUCGGCCAGCUc-GUCccagacuuccugGGCGCCcuCCg -3'
miRNA:   3'- gAGCCGGUCGGaaCAG------------CUGCGGuuGG- -5'
18462 5' -56.8 NC_004681.1 + 2016 0.66 0.755664
Target:  5'- -cCGGCCgcGGCCaggugGUCGugGagggCGGCCg -3'
miRNA:   3'- gaGCCGG--UCGGaa---CAGCugCg---GUUGG- -5'
18462 5' -56.8 NC_004681.1 + 2458 0.72 0.410421
Target:  5'- cCUCGaagaauGCCugGGCCUUGUUGGCGCgCGGCa -3'
miRNA:   3'- -GAGC------CGG--UCGGAACAGCUGCG-GUUGg -5'
18462 5' -56.8 NC_004681.1 + 3724 0.66 0.755664
Target:  5'- -gCGGCCuGCuuCUUGUCGcgggcgACGCCGuagauuucACCg -3'
miRNA:   3'- gaGCCGGuCG--GAACAGC------UGCGGU--------UGG- -5'
18462 5' -56.8 NC_004681.1 + 4626 0.67 0.694314
Target:  5'- uUUGcGUCAGCCUcgaUGUCGuCGUaGACCa -3'
miRNA:   3'- gAGC-CGGUCGGA---ACAGCuGCGgUUGG- -5'
18462 5' -56.8 NC_004681.1 + 5146 0.66 0.715096
Target:  5'- --aGGUUGGCCUUGgCGACGuUCAACa -3'
miRNA:   3'- gagCCGGUCGGAACaGCUGC-GGUUGg -5'
18462 5' -56.8 NC_004681.1 + 5177 0.72 0.410421
Target:  5'- -aCGGUCAGaCCcUGUCcGCGCCcGCCa -3'
miRNA:   3'- gaGCCGGUC-GGaACAGcUGCGGuUGG- -5'
18462 5' -56.8 NC_004681.1 + 6423 0.7 0.476177
Target:  5'- -cCGGCCAGCaCUccUGUCG-CGUCucugGACCa -3'
miRNA:   3'- gaGCCGGUCG-GA--ACAGCuGCGG----UUGG- -5'
18462 5' -56.8 NC_004681.1 + 6505 0.73 0.342585
Target:  5'- -cUGGCCGGUCgcuUCGGCGCCGggGCCu -3'
miRNA:   3'- gaGCCGGUCGGaacAGCUGCGGU--UGG- -5'
18462 5' -56.8 NC_004681.1 + 6993 0.7 0.485013
Target:  5'- -gUGGCCAcggacauGCCgugGUCGACGUCGAgCg -3'
miRNA:   3'- gaGCCGGU-------CGGaa-CAGCUGCGGUUgG- -5'
18462 5' -56.8 NC_004681.1 + 7801 0.72 0.370403
Target:  5'- aCUUGGauuCAGCCUUGUUGACGgacuuggucgacuuuUCGACCa -3'
miRNA:   3'- -GAGCCg--GUCGGAACAGCUGC---------------GGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 8392 0.66 0.755664
Target:  5'- --aGGCCGuCCUUGgCGGCGuCCGcGCCa -3'
miRNA:   3'- gagCCGGUcGGAACaGCUGC-GGU-UGG- -5'
18462 5' -56.8 NC_004681.1 + 8574 0.67 0.673308
Target:  5'- gCUCaGCCgcAGCCgUGcCGGgGUCAGCCg -3'
miRNA:   3'- -GAGcCGG--UCGGaACaGCUgCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 8974 0.73 0.334696
Target:  5'- cCUCGGCCucucGCUgu-UCGGCGCCAccucgGCCa -3'
miRNA:   3'- -GAGCCGGu---CGGaacAGCUGCGGU-----UGG- -5'
18462 5' -56.8 NC_004681.1 + 10495 0.73 0.350608
Target:  5'- -cUGGUCAGCCUUGgacagCGAggUGCCAGCg -3'
miRNA:   3'- gaGCCGGUCGGAACa----GCU--GCGGUUGg -5'
18462 5' -56.8 NC_004681.1 + 12095 0.69 0.546756
Target:  5'- uUCGGCUugguGGCCUUGUa---GCCAGCg -3'
miRNA:   3'- gAGCCGG----UCGGAACAgcugCGGUUGg -5'
18462 5' -56.8 NC_004681.1 + 12163 0.67 0.652157
Target:  5'- aCUCGGCCucguccaugcGGCC--GUCaACGCCGAUg -3'
miRNA:   3'- -GAGCCGG----------UCGGaaCAGcUGCGGUUGg -5'
18462 5' -56.8 NC_004681.1 + 12249 0.66 0.725378
Target:  5'- gUCGGgUGGCCcggUGcUGugGCCGACUc -3'
miRNA:   3'- gAGCCgGUCGGa--ACaGCugCGGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.