miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18462 5' -56.8 NC_004681.1 + 12816 0.66 0.755664
Target:  5'- cCUCaGCC-GUCUcagUGgcacccUCGAUGCCAGCCu -3'
miRNA:   3'- -GAGcCGGuCGGA---AC------AGCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 14506 0.69 0.546756
Target:  5'- cCUCGGCC-GCCUgcuUGcgcUUGGCGUCGGCg -3'
miRNA:   3'- -GAGCCGGuCGGA---AC---AGCUGCGGUUGg -5'
18462 5' -56.8 NC_004681.1 + 14654 0.69 0.526191
Target:  5'- -gCGGCCgugguGGCggUGgcggCGAUGCCGACCc -3'
miRNA:   3'- gaGCCGG-----UCGgaACa---GCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 14896 0.72 0.367051
Target:  5'- --gGGCCAGCUg----GGCGCCAGCCu -3'
miRNA:   3'- gagCCGGUCGGaacagCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 15700 0.68 0.620325
Target:  5'- -gCGGUC-GUCUUGUCGuCGCCGAa- -3'
miRNA:   3'- gaGCCGGuCGGAACAGCuGCGGUUgg -5'
18462 5' -56.8 NC_004681.1 + 16949 0.69 0.536439
Target:  5'- uCUCGGCCAGCUUgugccgGUCGuugauguaGCuCGACUc -3'
miRNA:   3'- -GAGCCGGUCGGAa-----CAGCug------CG-GUUGG- -5'
18462 5' -56.8 NC_004681.1 + 17411 0.66 0.745672
Target:  5'- -aCGGCC-GCCccacgggUGGCGCCAACa -3'
miRNA:   3'- gaGCCGGuCGGaaca---GCUGCGGUUGg -5'
18462 5' -56.8 NC_004681.1 + 17906 0.72 0.375469
Target:  5'- -gCGGCC-GCCgcGUUGAUGUCGGCCu -3'
miRNA:   3'- gaGCCGGuCGGaaCAGCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 18467 0.72 0.384017
Target:  5'- -cUGGCCuGCCaUGUCGaugGCGCC-ACCg -3'
miRNA:   3'- gaGCCGGuCGGaACAGC---UGCGGuUGG- -5'
18462 5' -56.8 NC_004681.1 + 18484 0.69 0.567569
Target:  5'- -gUGGCCAGCUgaucgguaUCGGCGCCGAg- -3'
miRNA:   3'- gaGCCGGUCGGaac-----AGCUGCGGUUgg -5'
18462 5' -56.8 NC_004681.1 + 21256 0.72 0.401495
Target:  5'- -aCGGCCAGCCUguggcucccUGgCGACccCCAGCCc -3'
miRNA:   3'- gaGCCGGUCGGA---------ACaGCUGc-GGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 22076 0.67 0.661688
Target:  5'- gUCGGUgUAGagCUUGUCGAgcaucgcaaaggaCGCCGGCCg -3'
miRNA:   3'- gAGCCG-GUCg-GAACAGCU-------------GCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 24088 0.78 0.175069
Target:  5'- gUgGGCCAGCaagGUucCGGCGCCAGCCu -3'
miRNA:   3'- gAgCCGGUCGgaaCA--GCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 26304 0.74 0.31183
Target:  5'- -gUGGCCGcacugcGCCgggucgauugUGUCGACGCUGACCg -3'
miRNA:   3'- gaGCCGGU------CGGa---------ACAGCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 27158 0.67 0.652157
Target:  5'- gUUGGUUguaGGUCcc-UCGACGCCGACCa -3'
miRNA:   3'- gAGCCGG---UCGGaacAGCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 29597 0.66 0.739625
Target:  5'- -aCGuGCUGGCCUacgcucUGcugaacucugauggcUCGACGUCGACCa -3'
miRNA:   3'- gaGC-CGGUCGGA------AC---------------AGCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 29683 0.67 0.694314
Target:  5'- --aGGCCAGCac-GUUGcCGCCcACCu -3'
miRNA:   3'- gagCCGGUCGgaaCAGCuGCGGuUGG- -5'
18462 5' -56.8 NC_004681.1 + 30786 0.67 0.641551
Target:  5'- -aCGGCCGcGCCaugacUGUCGAcaacuccuaCGCCAcgGCCu -3'
miRNA:   3'- gaGCCGGU-CGGa----ACAGCU---------GCGGU--UGG- -5'
18462 5' -56.8 NC_004681.1 + 31857 0.69 0.540558
Target:  5'- uUCuuGCCGGUCUggguacuugaucggGUCGGCGCCuGCCa -3'
miRNA:   3'- gAGc-CGGUCGGAa-------------CAGCUGCGGuUGG- -5'
18462 5' -56.8 NC_004681.1 + 32001 0.67 0.68068
Target:  5'- aUCGGCUcGCUga-UCGGCGCCGcgggugucggcacgGCCg -3'
miRNA:   3'- gAGCCGGuCGGaacAGCUGCGGU--------------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.