miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18462 5' -56.8 NC_004681.1 + 74433 0.69 0.526191
Target:  5'- -gCGGuCCAGCCacGUCGcuuugcgcACGCCAuGCCa -3'
miRNA:   3'- gaGCC-GGUCGGaaCAGC--------UGCGGU-UGG- -5'
18462 5' -56.8 NC_004681.1 + 72274 0.68 0.609722
Target:  5'- uUCGGCagcuGCCUUGUCaAUGUCAuuCCa -3'
miRNA:   3'- gAGCCGgu--CGGAACAGcUGCGGUu-GG- -5'
18462 5' -56.8 NC_004681.1 + 69004 0.66 0.742653
Target:  5'- -gCGGCCGugacgauggucagcGCCUcGaUGGCGUCGGCCg -3'
miRNA:   3'- gaGCCGGU--------------CGGAaCaGCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 68889 0.66 0.735574
Target:  5'- -gCGGCCGacGCCaucgaGGCGCUGACCa -3'
miRNA:   3'- gaGCCGGU--CGGaacagCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 66991 0.7 0.505924
Target:  5'- gUCGGCCugcacgcgcGCCUcaUGUCGcAgGCCAugCg -3'
miRNA:   3'- gAGCCGGu--------CGGA--ACAGC-UgCGGUugG- -5'
18462 5' -56.8 NC_004681.1 + 66576 0.68 0.609722
Target:  5'- -gUGGUCGGCCUUGUUca-GCCAGgCg -3'
miRNA:   3'- gaGCCGGUCGGAACAGcugCGGUUgG- -5'
18462 5' -56.8 NC_004681.1 + 62855 0.68 0.588578
Target:  5'- -gCGGUCAGCC-UGUCGAC-CUGAUUg -3'
miRNA:   3'- gaGCCGGUCGGaACAGCUGcGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 62545 0.71 0.454925
Target:  5'- cCUCGGCCauucggguuuccugGGCggcggagagggcggUGUCGGCGCcCAGCCa -3'
miRNA:   3'- -GAGCCGG--------------UCGga------------ACAGCUGCG-GUUGG- -5'
18462 5' -56.8 NC_004681.1 + 61770 0.68 0.609722
Target:  5'- cCUCGGCggCGGCCUccgCGGCGgCGGCUu -3'
miRNA:   3'- -GAGCCG--GUCGGAacaGCUGCgGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 60686 0.67 0.694314
Target:  5'- -gCGG-CGGCCUcGUCGAgcaccacguuCGUCGGCCa -3'
miRNA:   3'- gaGCCgGUCGGAaCAGCU----------GCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 60622 0.69 0.557135
Target:  5'- uUCGGCCcGUCUcgGUCGGgaagaugugacCGCCAuuGCCg -3'
miRNA:   3'- gAGCCGGuCGGAa-CAGCU-----------GCGGU--UGG- -5'
18462 5' -56.8 NC_004681.1 + 58629 0.67 0.662746
Target:  5'- aCUCGGCC--CCUcaaggUGUCcuGCGCCAcgGCCg -3'
miRNA:   3'- -GAGCCGGucGGA-----ACAGc-UGCGGU--UGG- -5'
18462 5' -56.8 NC_004681.1 + 58614 0.69 0.526191
Target:  5'- gCUCGGCCA-CCaguUUGUCGcgcaGCGCCuggacuGCCu -3'
miRNA:   3'- -GAGCCGGUcGG---AACAGC----UGCGGu-----UGG- -5'
18462 5' -56.8 NC_004681.1 + 58561 0.66 0.755664
Target:  5'- cCUgGGCCAGCgUcaagcUCGAUGCggaGACCg -3'
miRNA:   3'- -GAgCCGGUCGgAac---AGCUGCGg--UUGG- -5'
18462 5' -56.8 NC_004681.1 + 57589 0.66 0.745672
Target:  5'- -gUGGCCAGCCUgGgaacCGucCGCC-GCCu -3'
miRNA:   3'- gaGCCGGUCGGAaCa---GCu-GCGGuUGG- -5'
18462 5' -56.8 NC_004681.1 + 57526 0.69 0.536439
Target:  5'- aCUUGGCCAuCCgaGgaagggUGACGCCAGCa -3'
miRNA:   3'- -GAGCCGGUcGGaaCa-----GCUGCGGUUGg -5'
18462 5' -56.8 NC_004681.1 + 56212 0.67 0.694314
Target:  5'- gUCGG-UGGCCUggacCGGCGUCGACCc -3'
miRNA:   3'- gAGCCgGUCGGAaca-GCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 55002 0.67 0.673308
Target:  5'- gCUCGGCCugaaguGCCUucagGUCG-CGCCcggggAACUu -3'
miRNA:   3'- -GAGCCGGu-----CGGAa---CAGCuGCGG-----UUGG- -5'
18462 5' -56.8 NC_004681.1 + 54522 0.66 0.745672
Target:  5'- uCUCGGUcgacgCAGCUcUGgacgucgcgcUUGACGUCGACCa -3'
miRNA:   3'- -GAGCCG-----GUCGGaAC----------AGCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 54277 0.66 0.704738
Target:  5'- -gCGGUugaugacgaCAGCCUUGUUGACGgUGGCg -3'
miRNA:   3'- gaGCCG---------GUCGGAACAGCUGCgGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.