miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18462 5' -56.8 NC_004681.1 + 58629 0.67 0.662746
Target:  5'- aCUCGGCC--CCUcaaggUGUCcuGCGCCAcgGCCg -3'
miRNA:   3'- -GAGCCGGucGGA-----ACAGc-UGCGGU--UGG- -5'
18462 5' -56.8 NC_004681.1 + 50044 0.69 0.578053
Target:  5'- cCUCGGCUAcGUCUc--CGACGCCAucgacuGCCu -3'
miRNA:   3'- -GAGCCGGU-CGGAacaGCUGCGGU------UGG- -5'
18462 5' -56.8 NC_004681.1 + 628 0.68 0.588578
Target:  5'- -cCGcGCCuucGGCCcggUGaUCGACGCCGAUCc -3'
miRNA:   3'- gaGC-CGG---UCGGa--AC-AGCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 52535 0.68 0.588578
Target:  5'- aCUUGGCCgaggcAGCCU--UCGACGCUAucGCg -3'
miRNA:   3'- -GAGCCGG-----UCGGAacAGCUGCGGU--UGg -5'
18462 5' -56.8 NC_004681.1 + 38898 0.68 0.599136
Target:  5'- --aGGCCAGCCUgcUGgCGugGgucaauccauggCCAGCCu -3'
miRNA:   3'- gagCCGGUCGGA--ACaGCugC------------GGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 72274 0.68 0.609722
Target:  5'- uUCGGCagcuGCCUUGUCaAUGUCAuuCCa -3'
miRNA:   3'- gAGCCGgu--CGGAACAGcUGCGGUu-GG- -5'
18462 5' -56.8 NC_004681.1 + 33196 0.68 0.630938
Target:  5'- gCUCGGCCuGGCCgugaacaUGUUcaaGGCGCUAAgCa -3'
miRNA:   3'- -GAGCCGG-UCGGa------ACAG---CUGCGGUUgG- -5'
18462 5' -56.8 NC_004681.1 + 30786 0.67 0.641551
Target:  5'- -aCGGCCGcGCCaugacUGUCGAcaacuccuaCGCCAcgGCCu -3'
miRNA:   3'- gaGCCGGU-CGGa----ACAGCU---------GCGGU--UGG- -5'
18462 5' -56.8 NC_004681.1 + 42413 0.67 0.652157
Target:  5'- -aCGGCgCccccGUCUcGUCGGCGCgCAGCCu -3'
miRNA:   3'- gaGCCG-Gu---CGGAaCAGCUGCG-GUUGG- -5'
18462 5' -56.8 NC_004681.1 + 18484 0.69 0.567569
Target:  5'- -gUGGCCAGCUgaucgguaUCGGCGCCGAg- -3'
miRNA:   3'- gaGCCGGUCGGaac-----AGCUGCGGUUgg -5'
18462 5' -56.8 NC_004681.1 + 39198 0.69 0.526191
Target:  5'- cCUCGacgucgaggacGUCAGCCUgGUCGACuGUCAGCUc -3'
miRNA:   3'- -GAGC-----------CGGUCGGAaCAGCUG-CGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 74433 0.69 0.526191
Target:  5'- -gCGGuCCAGCCacGUCGcuuugcgcACGCCAuGCCa -3'
miRNA:   3'- gaGCC-GGUCGGaaCAGC--------UGCGGU-UGG- -5'
18462 5' -56.8 NC_004681.1 + 24088 0.78 0.175069
Target:  5'- gUgGGCCAGCaagGUucCGGCGCCAGCCu -3'
miRNA:   3'- gAgCCGGUCGgaaCA--GCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 26304 0.74 0.31183
Target:  5'- -gUGGCCGcacugcGCCgggucgauugUGUCGACGCUGACCg -3'
miRNA:   3'- gaGCCGGU------CGGa---------ACAGCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 42113 0.73 0.319318
Target:  5'- --gGGCCAaCUUUGaCGAUGCCAACCu -3'
miRNA:   3'- gagCCGGUcGGAACaGCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 8974 0.73 0.334696
Target:  5'- cCUCGGCCucucGCUgu-UCGGCGCCAccucgGCCa -3'
miRNA:   3'- -GAGCCGGu---CGGaacAGCUGCGGU-----UGG- -5'
18462 5' -56.8 NC_004681.1 + 21256 0.72 0.401495
Target:  5'- -aCGGCCAGCCUguggcucccUGgCGACccCCAGCCc -3'
miRNA:   3'- gaGCCGGUCGGA---------ACaGCUGc-GGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 5177 0.72 0.410421
Target:  5'- -aCGGUCAGaCCcUGUCcGCGCCcGCCa -3'
miRNA:   3'- gaGCCGGUC-GGaACAGcUGCGGuUGG- -5'
18462 5' -56.8 NC_004681.1 + 6423 0.7 0.476177
Target:  5'- -cCGGCCAGCaCUccUGUCG-CGUCucugGACCa -3'
miRNA:   3'- gaGCCGGUCG-GA--ACAGCuGCGG----UUGG- -5'
18462 5' -56.8 NC_004681.1 + 66991 0.7 0.505924
Target:  5'- gUCGGCCugcacgcgcGCCUcaUGUCGcAgGCCAugCg -3'
miRNA:   3'- gAGCCGGu--------CGGA--ACAGC-UgCGGUugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.