Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18462 | 5' | -56.8 | NC_004681.1 | + | 24088 | 0.78 | 0.175069 |
Target: 5'- gUgGGCCAGCaagGUucCGGCGCCAGCCu -3' miRNA: 3'- gAgCCGGUCGgaaCA--GCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 26304 | 0.74 | 0.31183 |
Target: 5'- -gUGGCCGcacugcGCCgggucgauugUGUCGACGCUGACCg -3' miRNA: 3'- gaGCCGGU------CGGa---------ACAGCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 42113 | 0.73 | 0.319318 |
Target: 5'- --gGGCCAaCUUUGaCGAUGCCAACCu -3' miRNA: 3'- gagCCGGUcGGAACaGCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 8974 | 0.73 | 0.334696 |
Target: 5'- cCUCGGCCucucGCUgu-UCGGCGCCAccucgGCCa -3' miRNA: 3'- -GAGCCGGu---CGGaacAGCUGCGGU-----UGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 21256 | 0.72 | 0.401495 |
Target: 5'- -aCGGCCAGCCUguggcucccUGgCGACccCCAGCCc -3' miRNA: 3'- gaGCCGGUCGGA---------ACaGCUGc-GGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 5177 | 0.72 | 0.410421 |
Target: 5'- -aCGGUCAGaCCcUGUCcGCGCCcGCCa -3' miRNA: 3'- gaGCCGGUC-GGaACAGcUGCGGuUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 6423 | 0.7 | 0.476177 |
Target: 5'- -cCGGCCAGCaCUccUGUCG-CGUCucugGACCa -3' miRNA: 3'- gaGCCGGUCG-GA--ACAGCuGCGG----UUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 66991 | 0.7 | 0.505924 |
Target: 5'- gUCGGCCugcacgcgcGCCUcaUGUCGcAgGCCAugCg -3' miRNA: 3'- gAGCCGGu--------CGGA--ACAGC-UgCGGUugG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 74433 | 0.69 | 0.526191 |
Target: 5'- -gCGGuCCAGCCacGUCGcuuugcgcACGCCAuGCCa -3' miRNA: 3'- gaGCC-GGUCGGaaCAGC--------UGCGGU-UGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 72274 | 0.68 | 0.609722 |
Target: 5'- uUCGGCagcuGCCUUGUCaAUGUCAuuCCa -3' miRNA: 3'- gAGCCGgu--CGGAACAGcUGCGGUu-GG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 38898 | 0.68 | 0.599136 |
Target: 5'- --aGGCCAGCCUgcUGgCGugGgucaauccauggCCAGCCu -3' miRNA: 3'- gagCCGGUCGGA--ACaGCugC------------GGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 52535 | 0.68 | 0.588578 |
Target: 5'- aCUUGGCCgaggcAGCCU--UCGACGCUAucGCg -3' miRNA: 3'- -GAGCCGG-----UCGGAacAGCUGCGGU--UGg -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 628 | 0.68 | 0.588578 |
Target: 5'- -cCGcGCCuucGGCCcggUGaUCGACGCCGAUCc -3' miRNA: 3'- gaGC-CGG---UCGGa--AC-AGCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 50044 | 0.69 | 0.578053 |
Target: 5'- cCUCGGCUAcGUCUc--CGACGCCAucgacuGCCu -3' miRNA: 3'- -GAGCCGGU-CGGAacaGCUGCGGU------UGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 18484 | 0.69 | 0.567569 |
Target: 5'- -gUGGCCAGCUgaucgguaUCGGCGCCGAg- -3' miRNA: 3'- gaGCCGGUCGGaac-----AGCUGCGGUUgg -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 39198 | 0.69 | 0.526191 |
Target: 5'- cCUCGacgucgaggacGUCAGCCUgGUCGACuGUCAGCUc -3' miRNA: 3'- -GAGC-----------CGGUCGGAaCAGCUG-CGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 12816 | 0.66 | 0.755664 |
Target: 5'- cCUCaGCC-GUCUcagUGgcacccUCGAUGCCAGCCu -3' miRNA: 3'- -GAGcCGGuCGGA---AC------AGCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 10495 | 0.73 | 0.350608 |
Target: 5'- -cUGGUCAGCCUUGgacagCGAggUGCCAGCg -3' miRNA: 3'- gaGCCGGUCGGAACa----GCU--GCGGUUGg -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 14896 | 0.72 | 0.367051 |
Target: 5'- --gGGCCAGCUg----GGCGCCAGCCu -3' miRNA: 3'- gagCCGGUCGGaacagCUGCGGUUGG- -5' |
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18462 | 5' | -56.8 | NC_004681.1 | + | 7801 | 0.72 | 0.370403 |
Target: 5'- aCUUGGauuCAGCCUUGUUGACGgacuuggucgacuuuUCGACCa -3' miRNA: 3'- -GAGCCg--GUCGGAACAGCUGC---------------GGUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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