miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18462 5' -56.8 NC_004681.1 + 6505 0.73 0.342585
Target:  5'- -cUGGCCGGUCgcuUCGGCGCCGggGCCu -3'
miRNA:   3'- gaGCCGGUCGGaacAGCUGCGGU--UGG- -5'
18462 5' -56.8 NC_004681.1 + 31857 0.69 0.540558
Target:  5'- uUCuuGCCGGUCUggguacuugaucggGUCGGCGCCuGCCa -3'
miRNA:   3'- gAGc-CGGUCGGAa-------------CAGCUGCGGuUGG- -5'
18462 5' -56.8 NC_004681.1 + 1393 0.69 0.546756
Target:  5'- gUCGGCCAGCUc-GUCccagacuuccugGGCGCCcuCCg -3'
miRNA:   3'- gAGCCGGUCGGaaCAG------------CUGCGGuuGG- -5'
18462 5' -56.8 NC_004681.1 + 12816 0.66 0.755664
Target:  5'- cCUCaGCC-GUCUcagUGgcacccUCGAUGCCAGCCu -3'
miRNA:   3'- -GAGcCGGuCGGA---AC------AGCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 32116 0.72 0.375469
Target:  5'- -cCGGCCGuGCCgacacccgCGGCGCCGAUCa -3'
miRNA:   3'- gaGCCGGU-CGGaaca----GCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 17906 0.72 0.375469
Target:  5'- -gCGGCC-GCCgcGUUGAUGUCGGCCu -3'
miRNA:   3'- gaGCCGGuCGGaaCAGCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 2458 0.72 0.410421
Target:  5'- cCUCGaagaauGCCugGGCCUUGUUGGCGCgCGGCa -3'
miRNA:   3'- -GAGC------CGG--UCGGAACAGCUGCG-GUUGg -5'
18462 5' -56.8 NC_004681.1 + 62545 0.71 0.454925
Target:  5'- cCUCGGCCauucggguuuccugGGCggcggagagggcggUGUCGGCGCcCAGCCa -3'
miRNA:   3'- -GAGCCGG--------------UCGga------------ACAGCUGCG-GUUGG- -5'
18462 5' -56.8 NC_004681.1 + 6993 0.7 0.485013
Target:  5'- -gUGGCCAcggacauGCCgugGUCGACGUCGAgCg -3'
miRNA:   3'- gaGCCGGU-------CGGaa-CAGCUGCGGUUgG- -5'
18462 5' -56.8 NC_004681.1 + 57526 0.69 0.536439
Target:  5'- aCUUGGCCAuCCgaGgaagggUGACGCCAGCa -3'
miRNA:   3'- -GAGCCGGUcGGaaCa-----GCUGCGGUUGg -5'
18462 5' -56.8 NC_004681.1 + 14654 0.69 0.526191
Target:  5'- -gCGGCCgugguGGCggUGgcggCGAUGCCGACCc -3'
miRNA:   3'- gaGCCGG-----UCGgaACa---GCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 38982 0.7 0.466455
Target:  5'- --aGGCUGGCCUUcuccagUGGCGCCAGCUc -3'
miRNA:   3'- gagCCGGUCGGAAca----GCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 10495 0.73 0.350608
Target:  5'- -cUGGUCAGCCUUGgacagCGAggUGCCAGCg -3'
miRNA:   3'- gaGCCGGUCGGAACa----GCU--GCGGUUGg -5'
18462 5' -56.8 NC_004681.1 + 32240 0.69 0.536439
Target:  5'- -gCGGuCCAGCUggucGUUGGCGUgGGCCg -3'
miRNA:   3'- gaGCC-GGUCGGaa--CAGCUGCGgUUGG- -5'
18462 5' -56.8 NC_004681.1 + 14896 0.72 0.367051
Target:  5'- --gGGCCAGCUg----GGCGCCAGCCu -3'
miRNA:   3'- gagCCGGUCGGaacagCUGCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 48923 0.71 0.456836
Target:  5'- -gUGGaacCCGGaCUUGUCGACGgCAACCa -3'
miRNA:   3'- gaGCC---GGUCgGAACAGCUGCgGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 16949 0.69 0.536439
Target:  5'- uCUCGGCCAGCUUgugccgGUCGuugauguaGCuCGACUc -3'
miRNA:   3'- -GAGCCGGUCGGAa-----CAGCug------CG-GUUGG- -5'
18462 5' -56.8 NC_004681.1 + 39655 0.69 0.543654
Target:  5'- cCUCGGCCGcGCuCUUgauguagcgGUCGAucugacgccgggauUGCCAGCCc -3'
miRNA:   3'- -GAGCCGGU-CG-GAA---------CAGCU--------------GCGGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 7801 0.72 0.370403
Target:  5'- aCUUGGauuCAGCCUUGUUGACGgacuuggucgacuuuUCGACCa -3'
miRNA:   3'- -GAGCCg--GUCGGAACAGCUGC---------------GGUUGG- -5'
18462 5' -56.8 NC_004681.1 + 18467 0.72 0.384017
Target:  5'- -cUGGCCuGCCaUGUCGaugGCGCC-ACCg -3'
miRNA:   3'- gaGCCGGuCGGaACAGC---UGCGGuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.