miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18463 3' -57.1 NC_004681.1 + 52383 0.66 0.677078
Target:  5'- uCGGCCUucUGGAGGaggaggaCAACGuCCGCg- -3'
miRNA:   3'- -GUCGGAcuAUCUCCg------GUUGC-GGCGau -5'
18463 3' -57.1 NC_004681.1 + 7577 0.66 0.666286
Target:  5'- aCGGCCgg--GGAGGCCGugauggcaccuACGcCCGCg- -3'
miRNA:   3'- -GUCGGacuaUCUCCGGU-----------UGC-GGCGau -5'
18463 3' -57.1 NC_004681.1 + 7005 0.66 0.666285
Target:  5'- gAGCCcacGGUGGuGGCCAcggacAUGCCGUg- -3'
miRNA:   3'- gUCGGa--CUAUCuCCGGU-----UGCGGCGau -5'
18463 3' -57.1 NC_004681.1 + 37120 0.66 0.644616
Target:  5'- uGGCCgGAaGGAGuGUCAGCGuuGCg- -3'
miRNA:   3'- gUCGGaCUaUCUC-CGGUUGCggCGau -5'
18463 3' -57.1 NC_004681.1 + 8282 0.66 0.622902
Target:  5'- gAGCCUcGGUGGc-GCgGACGCCGCc- -3'
miRNA:   3'- gUCGGA-CUAUCucCGgUUGCGGCGau -5'
18463 3' -57.1 NC_004681.1 + 1398 0.67 0.612053
Target:  5'- gGGCCugccgcaagaUGAUGGGccacgaauacacGGCCAuugGCGCCGCg- -3'
miRNA:   3'- gUCGG----------ACUAUCU------------CCGGU---UGCGGCGau -5'
18463 3' -57.1 NC_004681.1 + 30152 0.67 0.590413
Target:  5'- aCAGCggGAgcuccGAGGCCgAugGCCGCg- -3'
miRNA:   3'- -GUCGgaCUau---CUCCGG-UugCGGCGau -5'
18463 3' -57.1 NC_004681.1 + 1478 0.67 0.558229
Target:  5'- aGGCCcGAUAGGuGGCCAcCGCCucGCa- -3'
miRNA:   3'- gUCGGaCUAUCU-CCGGUuGCGG--CGau -5'
18463 3' -57.1 NC_004681.1 + 45097 0.67 0.557164
Target:  5'- nCGGUCUcgcucaaGAccGGGGCCGACGCCGUc- -3'
miRNA:   3'- -GUCGGA-------CUauCUCCGGUUGCGGCGau -5'
18463 3' -57.1 NC_004681.1 + 40459 0.67 0.557164
Target:  5'- gCGGCC-GAU-GAcauugaacgccgcGGCCGACGCCGCc- -3'
miRNA:   3'- -GUCGGaCUAuCU-------------CCGGUUGCGGCGau -5'
18463 3' -57.1 NC_004681.1 + 52128 0.68 0.547606
Target:  5'- gCAGCCUcaaGGUGGcGGCCAAgcaGCUGCa- -3'
miRNA:   3'- -GUCGGA---CUAUCuCCGGUUg--CGGCGau -5'
18463 3' -57.1 NC_004681.1 + 3238 0.68 0.537047
Target:  5'- aGGcCCUGGaGGAGGgCGA-GCCGCUGg -3'
miRNA:   3'- gUC-GGACUaUCUCCgGUUgCGGCGAU- -5'
18463 3' -57.1 NC_004681.1 + 39969 0.68 0.537047
Target:  5'- -cGCCUGGUcGAGGa-AGCGCUGCUc -3'
miRNA:   3'- guCGGACUAuCUCCggUUGCGGCGAu -5'
18463 3' -57.1 NC_004681.1 + 18206 0.68 0.537047
Target:  5'- -uGCCUGGccgGGGGcGCCGAUGCCGg-- -3'
miRNA:   3'- guCGGACUa--UCUC-CGGUUGCGGCgau -5'
18463 3' -57.1 NC_004681.1 + 45075 0.68 0.516152
Target:  5'- -cGCCgcGGUcGAGGCCcuCGCCGCg- -3'
miRNA:   3'- guCGGa-CUAuCUCCGGuuGCGGCGau -5'
18463 3' -57.1 NC_004681.1 + 1008 0.69 0.44593
Target:  5'- gAGCUcgagGAUGGAGGCgGACGCCaggGCg- -3'
miRNA:   3'- gUCGGa---CUAUCUCCGgUUGCGG---CGau -5'
18463 3' -57.1 NC_004681.1 + 16246 0.69 0.44593
Target:  5'- gAGCgacggGAUGGccGCCAGCGCCGCg- -3'
miRNA:   3'- gUCGga---CUAUCucCGGUUGCGGCGau -5'
18463 3' -57.1 NC_004681.1 + 31228 0.7 0.426855
Target:  5'- gCAGCgUGGcUGGGGGaCCGGCGCCGa-- -3'
miRNA:   3'- -GUCGgACU-AUCUCC-GGUUGCGGCgau -5'
18463 3' -57.1 NC_004681.1 + 27316 0.7 0.4175
Target:  5'- aCGGCCaGG-AGGGGCgCGACGCCGgUGu -3'
miRNA:   3'- -GUCGGaCUaUCUCCG-GUUGCGGCgAU- -5'
18463 3' -57.1 NC_004681.1 + 62183 0.7 0.4175
Target:  5'- -uGCCgcccAUGGAGGCCGccAUGCCGCg- -3'
miRNA:   3'- guCGGac--UAUCUCCGGU--UGCGGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.