Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18463 | 3' | -57.1 | NC_004681.1 | + | 14449 | 0.71 | 0.381367 |
Target: 5'- -cGCgaGGcGGAGGCgAACGCCGCg- -3' miRNA: 3'- guCGgaCUaUCUCCGgUUGCGGCGau -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 7455 | 0.71 | 0.34738 |
Target: 5'- gGGCUUGGcgGGAGGCUu-CGCCGCg- -3' miRNA: 3'- gUCGGACUa-UCUCCGGuuGCGGCGau -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 57931 | 0.71 | 0.339229 |
Target: 5'- aAGCgaGAgggAGGGGCCAGCcCCGCUc -3' miRNA: 3'- gUCGgaCUa--UCUCCGGUUGcGGCGAu -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 14321 | 0.78 | 0.119473 |
Target: 5'- uCAGCCUGGUAGcGGCgUAGCGCCGUUu -3' miRNA: 3'- -GUCGGACUAUCuCCG-GUUGCGGCGAu -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 42146 | 1.07 | 0.001131 |
Target: 5'- cCAGCCUGAUAGAGGCCAACGCCGCUAa -3' miRNA: 3'- -GUCGGACUAUCUCCGGUUGCGGCGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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