Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18463 | 3' | -57.1 | NC_004681.1 | + | 1008 | 0.69 | 0.44593 |
Target: 5'- gAGCUcgagGAUGGAGGCgGACGCCaggGCg- -3' miRNA: 3'- gUCGGa---CUAUCUCCGgUUGCGG---CGau -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 1398 | 0.67 | 0.612053 |
Target: 5'- gGGCCugccgcaagaUGAUGGGccacgaauacacGGCCAuugGCGCCGCg- -3' miRNA: 3'- gUCGG----------ACUAUCU------------CCGGU---UGCGGCGau -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 1478 | 0.67 | 0.558229 |
Target: 5'- aGGCCcGAUAGGuGGCCAcCGCCucGCa- -3' miRNA: 3'- gUCGGaCUAUCU-CCGGUuGCGG--CGau -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 3238 | 0.68 | 0.537047 |
Target: 5'- aGGcCCUGGaGGAGGgCGA-GCCGCUGg -3' miRNA: 3'- gUC-GGACUaUCUCCgGUUgCGGCGAU- -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 7005 | 0.66 | 0.666285 |
Target: 5'- gAGCCcacGGUGGuGGCCAcggacAUGCCGUg- -3' miRNA: 3'- gUCGGa--CUAUCuCCGGU-----UGCGGCGau -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 7455 | 0.71 | 0.34738 |
Target: 5'- gGGCUUGGcgGGAGGCUu-CGCCGCg- -3' miRNA: 3'- gUCGGACUa-UCUCCGGuuGCGGCGau -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 7577 | 0.66 | 0.666286 |
Target: 5'- aCGGCCgg--GGAGGCCGugauggcaccuACGcCCGCg- -3' miRNA: 3'- -GUCGGacuaUCUCCGGU-----------UGC-GGCGau -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 8282 | 0.66 | 0.622902 |
Target: 5'- gAGCCUcGGUGGc-GCgGACGCCGCc- -3' miRNA: 3'- gUCGGA-CUAUCucCGgUUGCGGCGau -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 14321 | 0.78 | 0.119473 |
Target: 5'- uCAGCCUGGUAGcGGCgUAGCGCCGUUu -3' miRNA: 3'- -GUCGGACUAUCuCCG-GUUGCGGCGAu -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 14449 | 0.71 | 0.381367 |
Target: 5'- -cGCgaGGcGGAGGCgAACGCCGCg- -3' miRNA: 3'- guCGgaCUaUCUCCGgUUGCGGCGau -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 16246 | 0.69 | 0.44593 |
Target: 5'- gAGCgacggGAUGGccGCCAGCGCCGCg- -3' miRNA: 3'- gUCGga---CUAUCucCGGUUGCGGCGau -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 18206 | 0.68 | 0.537047 |
Target: 5'- -uGCCUGGccgGGGGcGCCGAUGCCGg-- -3' miRNA: 3'- guCGGACUa--UCUC-CGGUUGCGGCgau -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 27316 | 0.7 | 0.4175 |
Target: 5'- aCGGCCaGG-AGGGGCgCGACGCCGgUGu -3' miRNA: 3'- -GUCGGaCUaUCUCCG-GUUGCGGCgAU- -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 30152 | 0.67 | 0.590413 |
Target: 5'- aCAGCggGAgcuccGAGGCCgAugGCCGCg- -3' miRNA: 3'- -GUCGgaCUau---CUCCGG-UugCGGCGau -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 31228 | 0.7 | 0.426855 |
Target: 5'- gCAGCgUGGcUGGGGGaCCGGCGCCGa-- -3' miRNA: 3'- -GUCGgACU-AUCUCC-GGUUGCGGCgau -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 37120 | 0.66 | 0.644616 |
Target: 5'- uGGCCgGAaGGAGuGUCAGCGuuGCg- -3' miRNA: 3'- gUCGGaCUaUCUC-CGGUUGCggCGau -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 39969 | 0.68 | 0.537047 |
Target: 5'- -cGCCUGGUcGAGGa-AGCGCUGCUc -3' miRNA: 3'- guCGGACUAuCUCCggUUGCGGCGAu -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 40459 | 0.67 | 0.557164 |
Target: 5'- gCGGCC-GAU-GAcauugaacgccgcGGCCGACGCCGCc- -3' miRNA: 3'- -GUCGGaCUAuCU-------------CCGGUUGCGGCGau -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 42146 | 1.07 | 0.001131 |
Target: 5'- cCAGCCUGAUAGAGGCCAACGCCGCUAa -3' miRNA: 3'- -GUCGGACUAUCUCCGGUUGCGGCGAU- -5' |
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18463 | 3' | -57.1 | NC_004681.1 | + | 45075 | 0.68 | 0.516152 |
Target: 5'- -cGCCgcGGUcGAGGCCcuCGCCGCg- -3' miRNA: 3'- guCGGa-CUAuCUCCGGuuGCGGCGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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