miRNA display CGI


Results 21 - 27 of 27 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18463 5' -57.3 NC_004681.1 + 7167 0.69 0.47481
Target:  5'- gUgGGGGGUGCCGuCCUUCaUgGCGCc -3'
miRNA:   3'- aAgCUCCCACGGUuGGAGGcAgUGCG- -5'
18463 5' -57.3 NC_004681.1 + 45110 0.69 0.47481
Target:  5'- --aGAccGGG-GCCGACg-CCGUCGCGCa -3'
miRNA:   3'- aagCU--CCCaCGGUUGgaGGCAGUGCG- -5'
18463 5' -57.3 NC_004681.1 + 60720 0.7 0.455417
Target:  5'- cUUGAGGGUGCCGcUCUgcUCGUCAagugcCGCa -3'
miRNA:   3'- aAGCUCCCACGGUuGGA--GGCAGU-----GCG- -5'
18463 5' -57.3 NC_004681.1 + 55970 0.7 0.445882
Target:  5'- gUCG-GGGUGCCGgugcucggcuGCCaggCCcUCACGCa -3'
miRNA:   3'- aAGCuCCCACGGU----------UGGa--GGcAGUGCG- -5'
18463 5' -57.3 NC_004681.1 + 60287 0.7 0.43646
Target:  5'- -gCGGcGGGUGCCGAUCaCC-UCGCGCu -3'
miRNA:   3'- aaGCU-CCCACGGUUGGaGGcAGUGCG- -5'
18463 5' -57.3 NC_004681.1 + 16738 0.74 0.253208
Target:  5'- cUCGAGGGUGuCCGggcugaugcccgccGCCUCCaUCGCGg -3'
miRNA:   3'- aAGCUCCCAC-GGU--------------UGGAGGcAGUGCg -5'
18463 5' -57.3 NC_004681.1 + 42180 1.08 0.001097
Target:  5'- cUUCGAGGGUGCCAACCUCCGUCACGCc -3'
miRNA:   3'- -AAGCUCCCACGGUUGGAGGCAGUGCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.