miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18464 3' -62.3 NC_004681.1 + 24187 0.66 0.47858
Target:  5'- -cUCGGCGUGCgcaccaacaAGCCgaucaacCGCGGCCUGa -3'
miRNA:   3'- gcAGCCGCGCG---------UCGGac-----GUGCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 46884 0.66 0.477636
Target:  5'- uCGaCGGCGCGCGggaugaccgugacGCCgUGCGCGcgcaGCgCCGg -3'
miRNA:   3'- -GCaGCCGCGCGU-------------CGG-ACGUGC----UG-GGC- -5'
18464 3' -62.3 NC_004681.1 + 30858 0.66 0.469187
Target:  5'- --aCGGCaCGCcGCCcGC-CGACCCGc -3'
miRNA:   3'- gcaGCCGcGCGuCGGaCGuGCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 24842 0.66 0.469187
Target:  5'- gCGUCGGCgGCGCGGgCg--GCGGCCg- -3'
miRNA:   3'- -GCAGCCG-CGCGUCgGacgUGCUGGgc -5'
18464 3' -62.3 NC_004681.1 + 58749 0.66 0.469187
Target:  5'- cCG-CGGCGCagGCGGCCgugGCGCagGACaCCu -3'
miRNA:   3'- -GCaGCCGCG--CGUCGGa--CGUG--CUG-GGc -5'
18464 3' -62.3 NC_004681.1 + 58535 0.66 0.469187
Target:  5'- aCGUgGGCGC-CGGUCUugGCGuCGGCCgCGg -3'
miRNA:   3'- -GCAgCCGCGcGUCGGA--CGU-GCUGG-GC- -5'
18464 3' -62.3 NC_004681.1 + 33006 0.66 0.459889
Target:  5'- --cCGGUa-GCGGCCUGC-CGACCuCGg -3'
miRNA:   3'- gcaGCCGcgCGUCGGACGuGCUGG-GC- -5'
18464 3' -62.3 NC_004681.1 + 69876 0.66 0.459889
Target:  5'- gGUaCGuGCGCGCGGCC-GCugGcaaACCUa -3'
miRNA:   3'- gCA-GC-CGCGCGUCGGaCGugC---UGGGc -5'
18464 3' -62.3 NC_004681.1 + 60643 0.66 0.459889
Target:  5'- ---aGGCGUGCGGCgUGacuacccuuCGGCCCGu -3'
miRNA:   3'- gcagCCGCGCGUCGgACgu-------GCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 62937 0.66 0.45069
Target:  5'- -cUCGGCGCGCucggugcGCCccuuguggUGCGCGACaUCGu -3'
miRNA:   3'- gcAGCCGCGCGu------CGG--------ACGUGCUG-GGC- -5'
18464 3' -62.3 NC_004681.1 + 51057 0.66 0.45069
Target:  5'- gCGUCGGCGUagguGUAGCCgaacuuggccaGCGCGugaCCGa -3'
miRNA:   3'- -GCAGCCGCG----CGUCGGa----------CGUGCug-GGC- -5'
18464 3' -62.3 NC_004681.1 + 69656 0.66 0.445219
Target:  5'- uCGUCGGCcuuuucacgucacuUGCAGUCgggGCACGGCCg- -3'
miRNA:   3'- -GCAGCCGc-------------GCGUCGGa--CGUGCUGGgc -5'
18464 3' -62.3 NC_004681.1 + 30253 0.66 0.441592
Target:  5'- aG-CGGCG-GCGGCCgGUACGGCgUCGa -3'
miRNA:   3'- gCaGCCGCgCGUCGGaCGUGCUG-GGC- -5'
18464 3' -62.3 NC_004681.1 + 67038 0.66 0.4326
Target:  5'- -cUCGGCGCGCGGCac-CAgGGCCg- -3'
miRNA:   3'- gcAGCCGCGCGUCGgacGUgCUGGgc -5'
18464 3' -62.3 NC_004681.1 + 18111 0.66 0.4326
Target:  5'- -aUCGGCGCcccCGGCCagGCAccgggucagguCGGCCCGu -3'
miRNA:   3'- gcAGCCGCGc--GUCGGa-CGU-----------GCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 7606 0.66 0.4326
Target:  5'- aCGUC-GCGCGCacccaGGCCcagGCAuCGACCgGa -3'
miRNA:   3'- -GCAGcCGCGCG-----UCGGa--CGU-GCUGGgC- -5'
18464 3' -62.3 NC_004681.1 + 9516 0.66 0.4326
Target:  5'- uCG-CGGCGaGCGGUCUGgAUGACCg- -3'
miRNA:   3'- -GCaGCCGCgCGUCGGACgUGCUGGgc -5'
18464 3' -62.3 NC_004681.1 + 24874 0.67 0.423715
Target:  5'- cCGU-GGCGC-CAGCgaGCGCGAUgCGc -3'
miRNA:   3'- -GCAgCCGCGcGUCGgaCGUGCUGgGC- -5'
18464 3' -62.3 NC_004681.1 + 54881 0.67 0.423715
Target:  5'- uGUCuGCGCgGCAGgUgucGuCACGACCCGa -3'
miRNA:   3'- gCAGcCGCG-CGUCgGa--C-GUGCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 56211 0.67 0.414941
Target:  5'- aGUCGGUG-GCcuGGaCCgGCGuCGACCCGa -3'
miRNA:   3'- gCAGCCGCgCG--UC-GGaCGU-GCUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.