miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18464 3' -62.3 NC_004681.1 + 42427 1.07 0.000473
Target:  5'- uCGUCGGCGCGCAGCCUGCACGACCCGu -3'
miRNA:   3'- -GCAGCCGCGCGUCGGACGUGCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 40242 0.75 0.124983
Target:  5'- uG-CGGCGuCGCGGCCUGCcUGuCCCGg -3'
miRNA:   3'- gCaGCCGC-GCGUCGGACGuGCuGGGC- -5'
18464 3' -62.3 NC_004681.1 + 4739 0.73 0.156772
Target:  5'- cCGUUGGCGCGCuucugcuuuagcGCCUGCGaGGCUCGu -3'
miRNA:   3'- -GCAGCCGCGCGu-----------CGGACGUgCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 35805 0.72 0.18804
Target:  5'- uG-CGGgGCGCGGCCaGgACGAUCCGu -3'
miRNA:   3'- gCaGCCgCGCGUCGGaCgUGCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 2437 0.72 0.192794
Target:  5'- uGUUGGCGCGCGGCaCgcagaaguggGCGcCGACCuCGg -3'
miRNA:   3'- gCAGCCGCGCGUCG-Ga---------CGU-GCUGG-GC- -5'
18464 3' -62.3 NC_004681.1 + 42874 0.72 0.207692
Target:  5'- uG-CaGCGCGU-GCCUGCGCGACaCCGa -3'
miRNA:   3'- gCaGcCGCGCGuCGGACGUGCUG-GGC- -5'
18464 3' -62.3 NC_004681.1 + 62506 0.71 0.212875
Target:  5'- uGUCGGCGCcCAGCCaUGCcaguACCCGg -3'
miRNA:   3'- gCAGCCGCGcGUCGG-ACGugc-UGGGC- -5'
18464 3' -62.3 NC_004681.1 + 30953 0.71 0.218168
Target:  5'- gGUCGGCGgGCGGCgUGC-CGuCCUc -3'
miRNA:   3'- gCAGCCGCgCGUCGgACGuGCuGGGc -5'
18464 3' -62.3 NC_004681.1 + 14427 0.71 0.234727
Target:  5'- -cUUGGCGCGCAGCUcauugGCccgcgccucgGCGACCUGa -3'
miRNA:   3'- gcAGCCGCGCGUCGGa----CG----------UGCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 16778 0.7 0.264656
Target:  5'- aCGUCGGUGCcugGCGGCauccccgGCAUG-CCCGa -3'
miRNA:   3'- -GCAGCCGCG---CGUCGga-----CGUGCuGGGC- -5'
18464 3' -62.3 NC_004681.1 + 62859 0.7 0.271001
Target:  5'- -cUCGGCG-GuCAGCCUGU-CGACCUGa -3'
miRNA:   3'- gcAGCCGCgC-GUCGGACGuGCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 30250 0.7 0.277468
Target:  5'- cCG-CGGcCGCGCcGCCUGagccCGACCCa -3'
miRNA:   3'- -GCaGCC-GCGCGuCGGACgu--GCUGGGc -5'
18464 3' -62.3 NC_004681.1 + 3739 0.69 0.284058
Target:  5'- aCGUCgaaGGCGaggGCGGCCUGCuucuugucgcggGCGACgCCGu -3'
miRNA:   3'- -GCAG---CCGCg--CGUCGGACG------------UGCUG-GGC- -5'
18464 3' -62.3 NC_004681.1 + 58789 0.69 0.310937
Target:  5'- cCGUCgaGGCGCGC-GCCcaggaguUGCugGGCCUc -3'
miRNA:   3'- -GCAG--CCGCGCGuCGG-------ACGugCUGGGc -5'
18464 3' -62.3 NC_004681.1 + 32013 0.69 0.31886
Target:  5'- -aUCGGCGcCGCGGgUgucgGCACGGCCgGu -3'
miRNA:   3'- gcAGCCGC-GCGUCgGa---CGUGCUGGgC- -5'
18464 3' -62.3 NC_004681.1 + 21907 0.69 0.325454
Target:  5'- ---aGGCGC-CGGUCUGCACGAaauacucgggguaCCCGa -3'
miRNA:   3'- gcagCCGCGcGUCGGACGUGCU-------------GGGC- -5'
18464 3' -62.3 NC_004681.1 + 60759 0.69 0.326193
Target:  5'- aCGagCGGCGCGUuuaguGCCcGCGCgcaucaGACCCGa -3'
miRNA:   3'- -GCa-GCCGCGCGu----CGGaCGUG------CUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 75527 0.68 0.333651
Target:  5'- aCGUgGGCuGCGCcGCgaGUACGGCCgCGc -3'
miRNA:   3'- -GCAgCCG-CGCGuCGgaCGUGCUGG-GC- -5'
18464 3' -62.3 NC_004681.1 + 19080 0.68 0.341233
Target:  5'- uGUCaGGUGgGUgaugggGGCUUGCACGcCCCGa -3'
miRNA:   3'- gCAG-CCGCgCG------UCGGACGUGCuGGGC- -5'
18464 3' -62.3 NC_004681.1 + 49309 0.68 0.341233
Target:  5'- ---aGGCGgGCGGUCUGCACaACCUc -3'
miRNA:   3'- gcagCCGCgCGUCGGACGUGcUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.