miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18464 3' -62.3 NC_004681.1 + 7280 0.67 0.406279
Target:  5'- gCGcCGaGUGCGCcGCCUGCgACGAgCUGc -3'
miRNA:   3'- -GCaGC-CGCGCGuCGGACG-UGCUgGGC- -5'
18464 3' -62.3 NC_004681.1 + 3400 0.67 0.3893
Target:  5'- aGUUGGC-CGCGgcGCCcGCGCGAgCCa -3'
miRNA:   3'- gCAGCCGcGCGU--CGGaCGUGCUgGGc -5'
18464 3' -62.3 NC_004681.1 + 24280 0.68 0.372793
Target:  5'- uGUUGGUGCGCAcGCCgaGUAgGuCCCa -3'
miRNA:   3'- gCAGCCGCGCGU-CGGa-CGUgCuGGGc -5'
18464 3' -62.3 NC_004681.1 + 17929 0.68 0.364719
Target:  5'- gGUUGGUGaggcCGguGCCuUGCGCGGCCg- -3'
miRNA:   3'- gCAGCCGC----GCguCGG-ACGUGCUGGgc -5'
18464 3' -62.3 NC_004681.1 + 4163 0.68 0.348939
Target:  5'- gGUUGGCGUGgGGCCaGCACucCUCGu -3'
miRNA:   3'- gCAGCCGCGCgUCGGaCGUGcuGGGC- -5'
18464 3' -62.3 NC_004681.1 + 61905 0.68 0.348939
Target:  5'- aGUUGGCGCuGUGGCaCcGCGagGACCCGa -3'
miRNA:   3'- gCAGCCGCG-CGUCG-GaCGUg-CUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 49309 0.68 0.341233
Target:  5'- ---aGGCGgGCGGUCUGCACaACCUc -3'
miRNA:   3'- gcagCCGCgCGUCGGACGUGcUGGGc -5'
18464 3' -62.3 NC_004681.1 + 70565 0.68 0.341233
Target:  5'- aCGUCuaCGCGCGGCC-GCAgGACCa- -3'
miRNA:   3'- -GCAGccGCGCGUCGGaCGUgCUGGgc -5'
18464 3' -62.3 NC_004681.1 + 19080 0.68 0.341233
Target:  5'- uGUCaGGUGgGUgaugggGGCUUGCACGcCCCGa -3'
miRNA:   3'- gCAG-CCGCgCG------UCGGACGUGCuGGGC- -5'
18464 3' -62.3 NC_004681.1 + 75527 0.68 0.333651
Target:  5'- aCGUgGGCuGCGCcGCgaGUACGGCCgCGc -3'
miRNA:   3'- -GCAgCCG-CGCGuCGgaCGUGCUGG-GC- -5'
18464 3' -62.3 NC_004681.1 + 60759 0.69 0.326193
Target:  5'- aCGagCGGCGCGUuuaguGCCcGCGCgcaucaGACCCGa -3'
miRNA:   3'- -GCa-GCCGCGCGu----CGGaCGUG------CUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 21907 0.69 0.325454
Target:  5'- ---aGGCGC-CGGUCUGCACGAaauacucgggguaCCCGa -3'
miRNA:   3'- gcagCCGCGcGUCGGACGUGCU-------------GGGC- -5'
18464 3' -62.3 NC_004681.1 + 32013 0.69 0.31886
Target:  5'- -aUCGGCGcCGCGGgUgucgGCACGGCCgGu -3'
miRNA:   3'- gcAGCCGC-GCGUCgGa---CGUGCUGGgC- -5'
18464 3' -62.3 NC_004681.1 + 58789 0.69 0.310937
Target:  5'- cCGUCgaGGCGCGC-GCCcaggaguUGCugGGCCUc -3'
miRNA:   3'- -GCAG--CCGCGCGuCGG-------ACGugCUGGGc -5'
18464 3' -62.3 NC_004681.1 + 3739 0.69 0.284058
Target:  5'- aCGUCgaaGGCGaggGCGGCCUGCuucuugucgcggGCGACgCCGu -3'
miRNA:   3'- -GCAG---CCGCg--CGUCGGACG------------UGCUG-GGC- -5'
18464 3' -62.3 NC_004681.1 + 30250 0.7 0.277468
Target:  5'- cCG-CGGcCGCGCcGCCUGagccCGACCCa -3'
miRNA:   3'- -GCaGCC-GCGCGuCGGACgu--GCUGGGc -5'
18464 3' -62.3 NC_004681.1 + 62859 0.7 0.271001
Target:  5'- -cUCGGCG-GuCAGCCUGU-CGACCUGa -3'
miRNA:   3'- gcAGCCGCgC-GUCGGACGuGCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 16778 0.7 0.264656
Target:  5'- aCGUCGGUGCcugGCGGCauccccgGCAUG-CCCGa -3'
miRNA:   3'- -GCAGCCGCG---CGUCGga-----CGUGCuGGGC- -5'
18464 3' -62.3 NC_004681.1 + 14427 0.71 0.234727
Target:  5'- -cUUGGCGCGCAGCUcauugGCccgcgccucgGCGACCUGa -3'
miRNA:   3'- gcAGCCGCGCGUCGGa----CG----------UGCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 30953 0.71 0.218168
Target:  5'- gGUCGGCGgGCGGCgUGC-CGuCCUc -3'
miRNA:   3'- gCAGCCGCgCGUCGgACGuGCuGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.