miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18464 3' -62.3 NC_004681.1 + 2437 0.72 0.192794
Target:  5'- uGUUGGCGCGCGGCaCgcagaaguggGCGcCGACCuCGg -3'
miRNA:   3'- gCAGCCGCGCGUCG-Ga---------CGU-GCUGG-GC- -5'
18464 3' -62.3 NC_004681.1 + 3400 0.67 0.3893
Target:  5'- aGUUGGC-CGCGgcGCCcGCGCGAgCCa -3'
miRNA:   3'- gCAGCCGcGCGU--CGGaCGUGCUgGGc -5'
18464 3' -62.3 NC_004681.1 + 3739 0.69 0.284058
Target:  5'- aCGUCgaaGGCGaggGCGGCCUGCuucuugucgcggGCGACgCCGu -3'
miRNA:   3'- -GCAG---CCGCg--CGUCGGACG------------UGCUG-GGC- -5'
18464 3' -62.3 NC_004681.1 + 4163 0.68 0.348939
Target:  5'- gGUUGGCGUGgGGCCaGCACucCUCGu -3'
miRNA:   3'- gCAGCCGCGCgUCGGaCGUGcuGGGC- -5'
18464 3' -62.3 NC_004681.1 + 4739 0.73 0.156772
Target:  5'- cCGUUGGCGCGCuucugcuuuagcGCCUGCGaGGCUCGu -3'
miRNA:   3'- -GCAGCCGCGCGu-----------CGGACGUgCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 7280 0.67 0.406279
Target:  5'- gCGcCGaGUGCGCcGCCUGCgACGAgCUGc -3'
miRNA:   3'- -GCaGC-CGCGCGuCGGACG-UGCUgGGC- -5'
18464 3' -62.3 NC_004681.1 + 7606 0.66 0.4326
Target:  5'- aCGUC-GCGCGCacccaGGCCcagGCAuCGACCgGa -3'
miRNA:   3'- -GCAGcCGCGCG-----UCGGa--CGU-GCUGGgC- -5'
18464 3' -62.3 NC_004681.1 + 9516 0.66 0.4326
Target:  5'- uCG-CGGCGaGCGGUCUGgAUGACCg- -3'
miRNA:   3'- -GCaGCCGCgCGUCGGACgUGCUGGgc -5'
18464 3' -62.3 NC_004681.1 + 14427 0.71 0.234727
Target:  5'- -cUUGGCGCGCAGCUcauugGCccgcgccucgGCGACCUGa -3'
miRNA:   3'- gcAGCCGCGCGUCGGa----CG----------UGCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 16778 0.7 0.264656
Target:  5'- aCGUCGGUGCcugGCGGCauccccgGCAUG-CCCGa -3'
miRNA:   3'- -GCAGCCGCG---CGUCGga-----CGUGCuGGGC- -5'
18464 3' -62.3 NC_004681.1 + 17929 0.68 0.364719
Target:  5'- gGUUGGUGaggcCGguGCCuUGCGCGGCCg- -3'
miRNA:   3'- gCAGCCGC----GCguCGG-ACGUGCUGGgc -5'
18464 3' -62.3 NC_004681.1 + 18111 0.66 0.4326
Target:  5'- -aUCGGCGCcccCGGCCagGCAccgggucagguCGGCCCGu -3'
miRNA:   3'- gcAGCCGCGc--GUCGGa-CGU-----------GCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 19080 0.68 0.341233
Target:  5'- uGUCaGGUGgGUgaugggGGCUUGCACGcCCCGa -3'
miRNA:   3'- gCAG-CCGCgCG------UCGGACGUGCuGGGC- -5'
18464 3' -62.3 NC_004681.1 + 21907 0.69 0.325454
Target:  5'- ---aGGCGC-CGGUCUGCACGAaauacucgggguaCCCGa -3'
miRNA:   3'- gcagCCGCGcGUCGGACGUGCU-------------GGGC- -5'
18464 3' -62.3 NC_004681.1 + 24187 0.66 0.47858
Target:  5'- -cUCGGCGUGCgcaccaacaAGCCgaucaacCGCGGCCUGa -3'
miRNA:   3'- gcAGCCGCGCG---------UCGGac-----GUGCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 24280 0.68 0.372793
Target:  5'- uGUUGGUGCGCAcGCCgaGUAgGuCCCa -3'
miRNA:   3'- gCAGCCGCGCGU-CGGa-CGUgCuGGGc -5'
18464 3' -62.3 NC_004681.1 + 24842 0.66 0.469187
Target:  5'- gCGUCGGCgGCGCGGgCg--GCGGCCg- -3'
miRNA:   3'- -GCAGCCG-CGCGUCgGacgUGCUGGgc -5'
18464 3' -62.3 NC_004681.1 + 24874 0.67 0.423715
Target:  5'- cCGU-GGCGC-CAGCgaGCGCGAUgCGc -3'
miRNA:   3'- -GCAgCCGCGcGUCGgaCGUGCUGgGC- -5'
18464 3' -62.3 NC_004681.1 + 30250 0.7 0.277468
Target:  5'- cCG-CGGcCGCGCcGCCUGagccCGACCCa -3'
miRNA:   3'- -GCaGCC-GCGCGuCGGACgu--GCUGGGc -5'
18464 3' -62.3 NC_004681.1 + 30253 0.66 0.441592
Target:  5'- aG-CGGCG-GCGGCCgGUACGGCgUCGa -3'
miRNA:   3'- gCaGCCGCgCGUCGGaCGUGCUG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.