miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18464 3' -62.3 NC_004681.1 + 42427 1.07 0.000473
Target:  5'- uCGUCGGCGCGCAGCCUGCACGACCCGu -3'
miRNA:   3'- -GCAGCCGCGCGUCGGACGUGCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 24187 0.66 0.47858
Target:  5'- -cUCGGCGUGCgcaccaacaAGCCgaucaacCGCGGCCUGa -3'
miRNA:   3'- gcAGCCGCGCG---------UCGGac-----GUGCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 30858 0.66 0.469187
Target:  5'- --aCGGCaCGCcGCCcGC-CGACCCGc -3'
miRNA:   3'- gcaGCCGcGCGuCGGaCGuGCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 24842 0.66 0.469187
Target:  5'- gCGUCGGCgGCGCGGgCg--GCGGCCg- -3'
miRNA:   3'- -GCAGCCG-CGCGUCgGacgUGCUGGgc -5'
18464 3' -62.3 NC_004681.1 + 33006 0.66 0.459889
Target:  5'- --cCGGUa-GCGGCCUGC-CGACCuCGg -3'
miRNA:   3'- gcaGCCGcgCGUCGGACGuGCUGG-GC- -5'
18464 3' -62.3 NC_004681.1 + 30253 0.66 0.441592
Target:  5'- aG-CGGCG-GCGGCCgGUACGGCgUCGa -3'
miRNA:   3'- gCaGCCGCgCGUCGGaCGUGCUG-GGC- -5'
18464 3' -62.3 NC_004681.1 + 18111 0.66 0.4326
Target:  5'- -aUCGGCGCcccCGGCCagGCAccgggucagguCGGCCCGu -3'
miRNA:   3'- gcAGCCGCGc--GUCGGa-CGU-----------GCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 56211 0.67 0.414941
Target:  5'- aGUCGGUG-GCcuGGaCCgGCGuCGACCCGa -3'
miRNA:   3'- gCAGCCGCgCG--UC-GGaCGU-GCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 7280 0.67 0.406279
Target:  5'- gCGcCGaGUGCGCcGCCUGCgACGAgCUGc -3'
miRNA:   3'- -GCaGC-CGCGCGuCGGACG-UGCUgGGC- -5'
18464 3' -62.3 NC_004681.1 + 3400 0.67 0.3893
Target:  5'- aGUUGGC-CGCGgcGCCcGCGCGAgCCa -3'
miRNA:   3'- gCAGCCGcGCGU--CGGaCGUGCUgGGc -5'
18464 3' -62.3 NC_004681.1 + 61905 0.68 0.348939
Target:  5'- aGUUGGCGCuGUGGCaCcGCGagGACCCGa -3'
miRNA:   3'- gCAGCCGCG-CGUCG-GaCGUg-CUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 4739 0.73 0.156772
Target:  5'- cCGUUGGCGCGCuucugcuuuagcGCCUGCGaGGCUCGu -3'
miRNA:   3'- -GCAGCCGCGCGu-----------CGGACGUgCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 35805 0.72 0.18804
Target:  5'- uG-CGGgGCGCGGCCaGgACGAUCCGu -3'
miRNA:   3'- gCaGCCgCGCGUCGGaCgUGCUGGGC- -5'
18464 3' -62.3 NC_004681.1 + 42874 0.72 0.207692
Target:  5'- uG-CaGCGCGU-GCCUGCGCGACaCCGa -3'
miRNA:   3'- gCaGcCGCGCGuCGGACGUGCUG-GGC- -5'
18464 3' -62.3 NC_004681.1 + 16778 0.7 0.264656
Target:  5'- aCGUCGGUGCcugGCGGCauccccgGCAUG-CCCGa -3'
miRNA:   3'- -GCAGCCGCG---CGUCGga-----CGUGCuGGGC- -5'
18464 3' -62.3 NC_004681.1 + 58789 0.69 0.310937
Target:  5'- cCGUCgaGGCGCGC-GCCcaggaguUGCugGGCCUc -3'
miRNA:   3'- -GCAG--CCGCGCGuCGG-------ACGugCUGGGc -5'
18464 3' -62.3 NC_004681.1 + 32013 0.69 0.31886
Target:  5'- -aUCGGCGcCGCGGgUgucgGCACGGCCgGu -3'
miRNA:   3'- gcAGCCGC-GCGUCgGa---CGUGCUGGgC- -5'
18464 3' -62.3 NC_004681.1 + 49309 0.68 0.341233
Target:  5'- ---aGGCGgGCGGUCUGCACaACCUc -3'
miRNA:   3'- gcagCCGCgCGUCGGACGUGcUGGGc -5'
18464 3' -62.3 NC_004681.1 + 46884 0.66 0.477636
Target:  5'- uCGaCGGCGCGCGggaugaccgugacGCCgUGCGCGcgcaGCgCCGg -3'
miRNA:   3'- -GCaGCCGCGCGU-------------CGG-ACGUGC----UG-GGC- -5'
18464 3' -62.3 NC_004681.1 + 2437 0.72 0.192794
Target:  5'- uGUUGGCGCGCGGCaCgcagaaguggGCGcCGACCuCGg -3'
miRNA:   3'- gCAGCCGCGCGUCG-Ga---------CGU-GCUGG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.