Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18464 | 5' | -57.1 | NC_004681.1 | + | 58641 | 0.66 | 0.683834 |
Target: 5'- cCCAgGUCuccugGGCaUGAUUGUCGCGCUc -3' miRNA: 3'- uGGUgCAG-----CCGcGCUAACAGUGCGGa -5' |
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18464 | 5' | -57.1 | NC_004681.1 | + | 21580 | 0.66 | 0.735574 |
Target: 5'- cGCCAagaGUCGGgGCGAUguUCACaCCc -3' miRNA: 3'- -UGGUg--CAGCCgCGCUAacAGUGcGGa -5' |
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18464 | 5' | -57.1 | NC_004681.1 | + | 58071 | 0.66 | 0.725378 |
Target: 5'- uGCCcauGCGUCGG-GCGAUcugggauugcguUGUgAUGCCg -3' miRNA: 3'- -UGG---UGCAGCCgCGCUA------------ACAgUGCGGa -5' |
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18464 | 5' | -57.1 | NC_004681.1 | + | 47897 | 0.66 | 0.704738 |
Target: 5'- cACCAgGUgGGUGCGuacUUGg-GCGCCUc -3' miRNA: 3'- -UGGUgCAgCCGCGCu--AACagUGCGGA- -5' |
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18464 | 5' | -57.1 | NC_004681.1 | + | 26384 | 0.66 | 0.683834 |
Target: 5'- gGCCACGUCGGaugagucuCGGUgGUgAUGCCg -3' miRNA: 3'- -UGGUGCAGCCgc------GCUAaCAgUGCGGa -5' |
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18464 | 5' | -57.1 | NC_004681.1 | + | 51744 | 0.66 | 0.694314 |
Target: 5'- gGCCGCccCGGCGCGGgcaagaGUaACGCCg -3' miRNA: 3'- -UGGUGcaGCCGCGCUaa----CAgUGCGGa -5' |
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18464 | 5' | -57.1 | NC_004681.1 | + | 25242 | 0.66 | 0.683834 |
Target: 5'- gGCCAUGgcgcccgCGGCgGCGGUUGggUGCGCUUc -3' miRNA: 3'- -UGGUGCa------GCCG-CGCUAACa-GUGCGGA- -5' |
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18464 | 5' | -57.1 | NC_004681.1 | + | 27675 | 0.66 | 0.683834 |
Target: 5'- uACgGCGgCGGCgGUGGUggugGUgGCGCCUa -3' miRNA: 3'- -UGgUGCaGCCG-CGCUAa---CAgUGCGGA- -5' |
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18464 | 5' | -57.1 | NC_004681.1 | + | 12171 | 0.66 | 0.683834 |
Target: 5'- gGCCACGuacUCGGCcucguccauGCGGccGUCaACGCCg -3' miRNA: 3'- -UGGUGC---AGCCG---------CGCUaaCAG-UGCGGa -5' |
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18464 | 5' | -57.1 | NC_004681.1 | + | 7267 | 0.66 | 0.715096 |
Target: 5'- -gCGCGaguuccUgGGCGCGggUGUCgaGCGCCUu -3' miRNA: 3'- ugGUGC------AgCCGCGCuaACAG--UGCGGA- -5' |
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18464 | 5' | -57.1 | NC_004681.1 | + | 24906 | 0.66 | 0.705777 |
Target: 5'- gACCGCGUUGGCccauGCGGgcaugggaauuuccGUgGCGCCa -3' miRNA: 3'- -UGGUGCAGCCG----CGCUaa------------CAgUGCGGa -5' |
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18464 | 5' | -57.1 | NC_004681.1 | + | 27909 | 0.66 | 0.694314 |
Target: 5'- cGCCAcCGUUGGCGCc---GcCGCGCCc -3' miRNA: 3'- -UGGU-GCAGCCGCGcuaaCaGUGCGGa -5' |
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18464 | 5' | -57.1 | NC_004681.1 | + | 57891 | 0.67 | 0.630938 |
Target: 5'- gGCgGCG-CGGCGCGug-GUCGCGgUCUc -3' miRNA: 3'- -UGgUGCaGCCGCGCuaaCAGUGC-GGA- -5' |
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18464 | 5' | -57.1 | NC_004681.1 | + | 32780 | 0.67 | 0.652157 |
Target: 5'- cGCgACGUCGGCGgGGUacccggaccacaUGUCGgcccaggucccCGCCa -3' miRNA: 3'- -UGgUGCAGCCGCgCUA------------ACAGU-----------GCGGa -5' |
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18464 | 5' | -57.1 | NC_004681.1 | + | 29915 | 0.67 | 0.641551 |
Target: 5'- cGCCGCGUUGGaUGcCGAgcuccCGCGCCUg -3' miRNA: 3'- -UGGUGCAGCC-GC-GCUaaca-GUGCGGA- -5' |
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18464 | 5' | -57.1 | NC_004681.1 | + | 60829 | 0.68 | 0.588578 |
Target: 5'- cGCCACcggaaUCGGCGUaggUGUCACGCg- -3' miRNA: 3'- -UGGUGc----AGCCGCGcuaACAGUGCGga -5' |
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18464 | 5' | -57.1 | NC_004681.1 | + | 40570 | 0.68 | 0.599136 |
Target: 5'- gGCgGCGUCGGcCGCGGcguucaaUGUCAucggcCGCCUc -3' miRNA: 3'- -UGgUGCAGCC-GCGCUa------ACAGU-----GCGGA- -5' |
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18464 | 5' | -57.1 | NC_004681.1 | + | 33716 | 0.68 | 0.599136 |
Target: 5'- uCCAgGUCGGCGaccuuggcguUGAUgucGUCGCGCUUg -3' miRNA: 3'- uGGUgCAGCCGC----------GCUAa--CAGUGCGGA- -5' |
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18464 | 5' | -57.1 | NC_004681.1 | + | 35467 | 0.69 | 0.526191 |
Target: 5'- aGCCACGU--GCGCGGUgugUACGCCg -3' miRNA: 3'- -UGGUGCAgcCGCGCUAacaGUGCGGa -5' |
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18464 | 5' | -57.1 | NC_004681.1 | + | 70413 | 0.69 | 0.526191 |
Target: 5'- uGCCACGcgCGcGCGCGAcagcUGUCAuCGUCUc -3' miRNA: 3'- -UGGUGCa-GC-CGCGCUa---ACAGU-GCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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