miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18464 5' -57.1 NC_004681.1 + 42463 1.06 0.001599
Target:  5'- uACCACGUCGGCGCGAUUGUCACGCCUc -3'
miRNA:   3'- -UGGUGCAGCCGCGCUAACAGUGCGGA- -5'
18464 5' -57.1 NC_004681.1 + 53042 0.76 0.226498
Target:  5'- gGCCACGUCGGUGaCGAUgaagcgCACGUCg -3'
miRNA:   3'- -UGGUGCAGCCGC-GCUAaca---GUGCGGa -5'
18464 5' -57.1 NC_004681.1 + 34346 0.75 0.23821
Target:  5'- cGCCGCGgCGGCGUGAgggUUGUgCGCGCUg -3'
miRNA:   3'- -UGGUGCaGCCGCGCU---AACA-GUGCGGa -5'
18464 5' -57.1 NC_004681.1 + 33374 0.73 0.334696
Target:  5'- gGCCGCGUCGcGCGCGccgUGUgGCaCCUg -3'
miRNA:   3'- -UGGUGCAGC-CGCGCua-ACAgUGcGGA- -5'
18464 5' -57.1 NC_004681.1 + 24057 0.71 0.437925
Target:  5'- uACCAgGUCGGCGaacguGUUGgCACGCCc -3'
miRNA:   3'- -UGGUgCAGCCGCgc---UAACaGUGCGGa -5'
18464 5' -57.1 NC_004681.1 + 8804 0.7 0.456836
Target:  5'- gACCGCGgCGGCGUuGUUGUgCGCaGCCg -3'
miRNA:   3'- -UGGUGCaGCCGCGcUAACA-GUG-CGGa -5'
18464 5' -57.1 NC_004681.1 + 70378 0.7 0.456836
Target:  5'- aACCGCG-CGGUa-GAUUGUCACGCg- -3'
miRNA:   3'- -UGGUGCaGCCGcgCUAACAGUGCGga -5'
18464 5' -57.1 NC_004681.1 + 50452 0.7 0.467422
Target:  5'- uACCACGUCGuGgGCGAcgcccaccccgaccgUGUCcuGCGCCa -3'
miRNA:   3'- -UGGUGCAGC-CgCGCUa--------------ACAG--UGCGGa -5'
18464 5' -57.1 NC_004681.1 + 45020 0.7 0.476177
Target:  5'- cACCGCGUgGGgGCGAgcucUUugGCCUc -3'
miRNA:   3'- -UGGUGCAgCCgCGCUaac-AGugCGGA- -5'
18464 5' -57.1 NC_004681.1 + 61320 0.7 0.476177
Target:  5'- cGCCACGuucUCGGCG-Gc--GUCGCGCCa -3'
miRNA:   3'- -UGGUGC---AGCCGCgCuaaCAGUGCGGa -5'
18464 5' -57.1 NC_004681.1 + 70413 0.69 0.526191
Target:  5'- uGCCACGcgCGcGCGCGAcagcUGUCAuCGUCUc -3'
miRNA:   3'- -UGGUGCa-GC-CGCGCUa---ACAGU-GCGGA- -5'
18464 5' -57.1 NC_004681.1 + 35467 0.69 0.526191
Target:  5'- aGCCACGU--GCGCGGUgugUACGCCg -3'
miRNA:   3'- -UGGUGCAgcCGCGCUAacaGUGCGGa -5'
18464 5' -57.1 NC_004681.1 + 60829 0.68 0.588578
Target:  5'- cGCCACcggaaUCGGCGUaggUGUCACGCg- -3'
miRNA:   3'- -UGGUGc----AGCCGCGcuaACAGUGCGga -5'
18464 5' -57.1 NC_004681.1 + 40570 0.68 0.599136
Target:  5'- gGCgGCGUCGGcCGCGGcguucaaUGUCAucggcCGCCUc -3'
miRNA:   3'- -UGgUGCAGCC-GCGCUa------ACAGU-----GCGGA- -5'
18464 5' -57.1 NC_004681.1 + 33716 0.68 0.599136
Target:  5'- uCCAgGUCGGCGaccuuggcguUGAUgucGUCGCGCUUg -3'
miRNA:   3'- uGGUgCAGCCGC----------GCUAa--CAGUGCGGA- -5'
18464 5' -57.1 NC_004681.1 + 57891 0.67 0.630938
Target:  5'- gGCgGCG-CGGCGCGug-GUCGCGgUCUc -3'
miRNA:   3'- -UGgUGCaGCCGCGCuaaCAGUGC-GGA- -5'
18464 5' -57.1 NC_004681.1 + 29915 0.67 0.641551
Target:  5'- cGCCGCGUUGGaUGcCGAgcuccCGCGCCUg -3'
miRNA:   3'- -UGGUGCAGCC-GC-GCUaaca-GUGCGGA- -5'
18464 5' -57.1 NC_004681.1 + 32780 0.67 0.652157
Target:  5'- cGCgACGUCGGCGgGGUacccggaccacaUGUCGgcccaggucccCGCCa -3'
miRNA:   3'- -UGgUGCAGCCGCgCUA------------ACAGU-----------GCGGa -5'
18464 5' -57.1 NC_004681.1 + 27675 0.66 0.683834
Target:  5'- uACgGCGgCGGCgGUGGUggugGUgGCGCCUa -3'
miRNA:   3'- -UGgUGCaGCCG-CGCUAa---CAgUGCGGA- -5'
18464 5' -57.1 NC_004681.1 + 25242 0.66 0.683834
Target:  5'- gGCCAUGgcgcccgCGGCgGCGGUUGggUGCGCUUc -3'
miRNA:   3'- -UGGUGCa------GCCG-CGCUAACa-GUGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.