miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18464 5' -57.1 NC_004681.1 + 7267 0.66 0.715096
Target:  5'- -gCGCGaguuccUgGGCGCGggUGUCgaGCGCCUu -3'
miRNA:   3'- ugGUGC------AgCCGCGCuaACAG--UGCGGA- -5'
18464 5' -57.1 NC_004681.1 + 8804 0.7 0.456836
Target:  5'- gACCGCGgCGGCGUuGUUGUgCGCaGCCg -3'
miRNA:   3'- -UGGUGCaGCCGCGcUAACA-GUG-CGGa -5'
18464 5' -57.1 NC_004681.1 + 12171 0.66 0.683834
Target:  5'- gGCCACGuacUCGGCcucguccauGCGGccGUCaACGCCg -3'
miRNA:   3'- -UGGUGC---AGCCG---------CGCUaaCAG-UGCGGa -5'
18464 5' -57.1 NC_004681.1 + 21580 0.66 0.735574
Target:  5'- cGCCAagaGUCGGgGCGAUguUCACaCCc -3'
miRNA:   3'- -UGGUg--CAGCCgCGCUAacAGUGcGGa -5'
18464 5' -57.1 NC_004681.1 + 24057 0.71 0.437925
Target:  5'- uACCAgGUCGGCGaacguGUUGgCACGCCc -3'
miRNA:   3'- -UGGUgCAGCCGCgc---UAACaGUGCGGa -5'
18464 5' -57.1 NC_004681.1 + 24906 0.66 0.705777
Target:  5'- gACCGCGUUGGCccauGCGGgcaugggaauuuccGUgGCGCCa -3'
miRNA:   3'- -UGGUGCAGCCG----CGCUaa------------CAgUGCGGa -5'
18464 5' -57.1 NC_004681.1 + 25242 0.66 0.683834
Target:  5'- gGCCAUGgcgcccgCGGCgGCGGUUGggUGCGCUUc -3'
miRNA:   3'- -UGGUGCa------GCCG-CGCUAACa-GUGCGGA- -5'
18464 5' -57.1 NC_004681.1 + 26384 0.66 0.683834
Target:  5'- gGCCACGUCGGaugagucuCGGUgGUgAUGCCg -3'
miRNA:   3'- -UGGUGCAGCCgc------GCUAaCAgUGCGGa -5'
18464 5' -57.1 NC_004681.1 + 27675 0.66 0.683834
Target:  5'- uACgGCGgCGGCgGUGGUggugGUgGCGCCUa -3'
miRNA:   3'- -UGgUGCaGCCG-CGCUAa---CAgUGCGGA- -5'
18464 5' -57.1 NC_004681.1 + 27909 0.66 0.694314
Target:  5'- cGCCAcCGUUGGCGCc---GcCGCGCCc -3'
miRNA:   3'- -UGGU-GCAGCCGCGcuaaCaGUGCGGa -5'
18464 5' -57.1 NC_004681.1 + 29915 0.67 0.641551
Target:  5'- cGCCGCGUUGGaUGcCGAgcuccCGCGCCUg -3'
miRNA:   3'- -UGGUGCAGCC-GC-GCUaaca-GUGCGGA- -5'
18464 5' -57.1 NC_004681.1 + 32780 0.67 0.652157
Target:  5'- cGCgACGUCGGCGgGGUacccggaccacaUGUCGgcccaggucccCGCCa -3'
miRNA:   3'- -UGgUGCAGCCGCgCUA------------ACAGU-----------GCGGa -5'
18464 5' -57.1 NC_004681.1 + 33374 0.73 0.334696
Target:  5'- gGCCGCGUCGcGCGCGccgUGUgGCaCCUg -3'
miRNA:   3'- -UGGUGCAGC-CGCGCua-ACAgUGcGGA- -5'
18464 5' -57.1 NC_004681.1 + 33716 0.68 0.599136
Target:  5'- uCCAgGUCGGCGaccuuggcguUGAUgucGUCGCGCUUg -3'
miRNA:   3'- uGGUgCAGCCGC----------GCUAa--CAGUGCGGA- -5'
18464 5' -57.1 NC_004681.1 + 34346 0.75 0.23821
Target:  5'- cGCCGCGgCGGCGUGAgggUUGUgCGCGCUg -3'
miRNA:   3'- -UGGUGCaGCCGCGCU---AACA-GUGCGGa -5'
18464 5' -57.1 NC_004681.1 + 35467 0.69 0.526191
Target:  5'- aGCCACGU--GCGCGGUgugUACGCCg -3'
miRNA:   3'- -UGGUGCAgcCGCGCUAacaGUGCGGa -5'
18464 5' -57.1 NC_004681.1 + 40570 0.68 0.599136
Target:  5'- gGCgGCGUCGGcCGCGGcguucaaUGUCAucggcCGCCUc -3'
miRNA:   3'- -UGgUGCAGCC-GCGCUa------ACAGU-----GCGGA- -5'
18464 5' -57.1 NC_004681.1 + 42463 1.06 0.001599
Target:  5'- uACCACGUCGGCGCGAUUGUCACGCCUc -3'
miRNA:   3'- -UGGUGCAGCCGCGCUAACAGUGCGGA- -5'
18464 5' -57.1 NC_004681.1 + 45020 0.7 0.476177
Target:  5'- cACCGCGUgGGgGCGAgcucUUugGCCUc -3'
miRNA:   3'- -UGGUGCAgCCgCGCUaac-AGugCGGA- -5'
18464 5' -57.1 NC_004681.1 + 47897 0.66 0.704738
Target:  5'- cACCAgGUgGGUGCGuacUUGg-GCGCCUc -3'
miRNA:   3'- -UGGUgCAgCCGCGCu--AACagUGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.