miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18465 3' -54.8 NC_004681.1 + 69513 0.66 0.842357
Target:  5'- gCGCCAC-GCCGugugcucacuGCUGCGGCGGCCg- -3'
miRNA:   3'- aGUGGUGaCGGC----------UGGUGUUGUUGGgc -5'
18465 3' -54.8 NC_004681.1 + 5662 0.66 0.842357
Target:  5'- uUCGCCgACgacgaggucgUGCCGAuCCGCuucuuCAACCCu -3'
miRNA:   3'- -AGUGG-UG----------ACGGCU-GGUGuu---GUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 25298 0.66 0.842357
Target:  5'- gUCGCCGCcguUGCCagcGCCGcCAGgGGCCUGa -3'
miRNA:   3'- -AGUGGUG---ACGGc--UGGU-GUUgUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 7240 0.66 0.842357
Target:  5'- gCGCCuuggACUGCagGAUCACcGCAuCCCGg -3'
miRNA:   3'- aGUGG----UGACGg-CUGGUGuUGUuGGGC- -5'
18465 3' -54.8 NC_004681.1 + 18044 0.66 0.842357
Target:  5'- cCACCGgaGCCGcCCuCGGCAcucACCUGc -3'
miRNA:   3'- aGUGGUgaCGGCuGGuGUUGU---UGGGC- -5'
18465 3' -54.8 NC_004681.1 + 28149 0.66 0.842357
Target:  5'- cCGCCACcGCCucGACCGcCAGCGccaGCgCCGu -3'
miRNA:   3'- aGUGGUGaCGG--CUGGU-GUUGU---UG-GGC- -5'
18465 3' -54.8 NC_004681.1 + 13086 0.66 0.833718
Target:  5'- cCGCCGCUGUCuAgUACAGCGcauuccguuaacACCCGc -3'
miRNA:   3'- aGUGGUGACGGcUgGUGUUGU------------UGGGC- -5'
18465 3' -54.8 NC_004681.1 + 55398 0.66 0.833718
Target:  5'- gUCGuCCACUGCUGGgCGgucgUAACuGACCCGc -3'
miRNA:   3'- -AGU-GGUGACGGCUgGU----GUUG-UUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 24969 0.66 0.833718
Target:  5'- cUCGCCAUUGCUGgugagggaGCCuuGGCGGCCg- -3'
miRNA:   3'- -AGUGGUGACGGC--------UGGugUUGUUGGgc -5'
18465 3' -54.8 NC_004681.1 + 9204 0.66 0.833718
Target:  5'- aCGCCAgaGcCCGAgC-CAGCGGCgCCGg -3'
miRNA:   3'- aGUGGUgaC-GGCUgGuGUUGUUG-GGC- -5'
18465 3' -54.8 NC_004681.1 + 32610 0.66 0.833718
Target:  5'- cUCACC-CaGCgCGAUCAgGACGucGCCCGc -3'
miRNA:   3'- -AGUGGuGaCG-GCUGGUgUUGU--UGGGC- -5'
18465 3' -54.8 NC_004681.1 + 60392 0.66 0.833718
Target:  5'- cUC-CCACUGCCGcGCUGCAuCAGuCgCCGg -3'
miRNA:   3'- -AGuGGUGACGGC-UGGUGUuGUU-G-GGC- -5'
18465 3' -54.8 NC_004681.1 + 69160 0.66 0.832842
Target:  5'- gCACCACUGaaaggcgcagccaUCGGugUCGCAgguGCGGCCCGg -3'
miRNA:   3'- aGUGGUGAC-------------GGCU--GGUGU---UGUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 58514 0.66 0.831965
Target:  5'- gCugCGCgacaaacuggugGCCGAgCGCGACAaucauGCCCa -3'
miRNA:   3'- aGugGUGa-----------CGGCUgGUGUUGU-----UGGGc -5'
18465 3' -54.8 NC_004681.1 + 16447 0.66 0.824875
Target:  5'- gUCGCCACccaCCG-CCGCAGCGgagaugGCCUGc -3'
miRNA:   3'- -AGUGGUGac-GGCuGGUGUUGU------UGGGC- -5'
18465 3' -54.8 NC_004681.1 + 49348 0.66 0.824875
Target:  5'- gCGCCGCgggcGCUGACCACugggcGCAcACCUu -3'
miRNA:   3'- aGUGGUGa---CGGCUGGUGu----UGU-UGGGc -5'
18465 3' -54.8 NC_004681.1 + 23630 0.66 0.824875
Target:  5'- gUC-CCGUUcGCCGACgACGGCGAgCCGg -3'
miRNA:   3'- -AGuGGUGA-CGGCUGgUGUUGUUgGGC- -5'
18465 3' -54.8 NC_004681.1 + 61072 0.66 0.824875
Target:  5'- gUCGgCAC-GCUGACCGC--CGACCCc -3'
miRNA:   3'- -AGUgGUGaCGGCUGGUGuuGUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 16094 0.66 0.824875
Target:  5'- gUCACCACcGCgGcGCgCACAGCcGCCaCGg -3'
miRNA:   3'- -AGUGGUGaCGgC-UG-GUGUUGuUGG-GC- -5'
18465 3' -54.8 NC_004681.1 + 26455 0.66 0.824875
Target:  5'- cCGCCAgaGUaCGGCUACGGCcuGGCCUGg -3'
miRNA:   3'- aGUGGUgaCG-GCUGGUGUUG--UUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.