miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18465 3' -54.8 NC_004681.1 + 55398 0.66 0.833718
Target:  5'- gUCGuCCACUGCUGGgCGgucgUAACuGACCCGc -3'
miRNA:   3'- -AGU-GGUGACGGCUgGU----GUUG-UUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 23630 0.66 0.824875
Target:  5'- gUC-CCGUUcGCCGACgACGGCGAgCCGg -3'
miRNA:   3'- -AGuGGUGA-CGGCUGgUGUUGUUgGGC- -5'
18465 3' -54.8 NC_004681.1 + 26455 0.66 0.824875
Target:  5'- cCGCCAgaGUaCGGCUACGGCcuGGCCUGg -3'
miRNA:   3'- aGUGGUgaCG-GCUGGUGUUG--UUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 22782 0.66 0.800054
Target:  5'- cCACCACggggccugucguggGCCGcuacuacggcaucGCCGgGGCGACCCc -3'
miRNA:   3'- aGUGGUGa-------------CGGC-------------UGGUgUUGUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 69268 0.66 0.806615
Target:  5'- aCACCugauggGCCGAUCugAugGACCgCGu -3'
miRNA:   3'- aGUGGuga---CGGCUGGugUugUUGG-GC- -5'
18465 3' -54.8 NC_004681.1 + 58514 0.66 0.831965
Target:  5'- gCugCGCgacaaacuggugGCCGAgCGCGACAaucauGCCCa -3'
miRNA:   3'- aGugGUGa-----------CGGCUgGUGUUGU-----UGGGc -5'
18465 3' -54.8 NC_004681.1 + 28149 0.66 0.842357
Target:  5'- cCGCCACcGCCucGACCGcCAGCGccaGCgCCGu -3'
miRNA:   3'- aGUGGUGaCGG--CUGGU-GUUGU---UG-GGC- -5'
18465 3' -54.8 NC_004681.1 + 13086 0.66 0.833718
Target:  5'- cCGCCGCUGUCuAgUACAGCGcauuccguuaacACCCGc -3'
miRNA:   3'- aGUGGUGACGGcUgGUGUUGU------------UGGGC- -5'
18465 3' -54.8 NC_004681.1 + 5662 0.66 0.842357
Target:  5'- uUCGCCgACgacgaggucgUGCCGAuCCGCuucuuCAACCCu -3'
miRNA:   3'- -AGUGG-UG----------ACGGCU-GGUGuu---GUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 61072 0.66 0.824875
Target:  5'- gUCGgCAC-GCUGACCGC--CGACCCc -3'
miRNA:   3'- -AGUgGUGaCGGCUGGUGuuGUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 12996 0.66 0.824875
Target:  5'- aCACCGCUGgC-ACCGCgGACGACgUGg -3'
miRNA:   3'- aGUGGUGACgGcUGGUG-UUGUUGgGC- -5'
18465 3' -54.8 NC_004681.1 + 30779 0.66 0.805682
Target:  5'- gUCACCAacgGCCGcGCCAugacuguCGACAACUCc -3'
miRNA:   3'- -AGUGGUga-CGGC-UGGU-------GUUGUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 10240 0.66 0.797216
Target:  5'- uUCGCUGCgGgUGACCuACAcccacggcuACAACCCGg -3'
miRNA:   3'- -AGUGGUGaCgGCUGG-UGU---------UGUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 17956 0.66 0.797216
Target:  5'- -gGCgGCUccGUgGGCCACcGCAGCCCa -3'
miRNA:   3'- agUGgUGA--CGgCUGGUGuUGUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 16220 0.66 0.806615
Target:  5'- -gGCCACgccuucgGCgGAaauCC-CAACGACCCGa -3'
miRNA:   3'- agUGGUGa------CGgCU---GGuGUUGUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 50388 0.66 0.815837
Target:  5'- cUACCGCUaccaCGACUACGGCGACUgGu -3'
miRNA:   3'- aGUGGUGAcg--GCUGGUGUUGUUGGgC- -5'
18465 3' -54.8 NC_004681.1 + 16094 0.66 0.824875
Target:  5'- gUCACCACcGCgGcGCgCACAGCcGCCaCGg -3'
miRNA:   3'- -AGUGGUGaCGgC-UG-GUGUUGuUGG-GC- -5'
18465 3' -54.8 NC_004681.1 + 48335 0.66 0.815837
Target:  5'- gUCGCCAUgaaguacGCCGAagaCAagcgaGACGACCUGg -3'
miRNA:   3'- -AGUGGUGa------CGGCUg--GUg----UUGUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 49348 0.66 0.824875
Target:  5'- gCGCCGCgggcGCUGACCACugggcGCAcACCUu -3'
miRNA:   3'- aGUGGUGa---CGGCUGGUGu----UGU-UGGGc -5'
18465 3' -54.8 NC_004681.1 + 70838 0.66 0.806615
Target:  5'- gUCuCCAC-GCucagCGGCCGCAGCAugCCc -3'
miRNA:   3'- -AGuGGUGaCG----GCUGGUGUUGUugGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.