miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18465 3' -54.8 NC_004681.1 + 42641 1.09 0.001777
Target:  5'- cUCACCACUGCCGACCACAACAACCCGu -3'
miRNA:   3'- -AGUGGUGACGGCUGGUGUUGUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 60670 0.75 0.315835
Target:  5'- gCACCACguucGUCGGCCA--GCGGCCCGa -3'
miRNA:   3'- aGUGGUGa---CGGCUGGUguUGUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 28247 0.75 0.347382
Target:  5'- -uGCCGCUGCCG-CCGCu-CGAUCCGc -3'
miRNA:   3'- agUGGUGACGGCuGGUGuuGUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 53985 0.73 0.407816
Target:  5'- -gACUACUGCgUGGCCAguACAGCCCc -3'
miRNA:   3'- agUGGUGACG-GCUGGUguUGUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 4132 0.73 0.407816
Target:  5'- -gGCCGCUGagGcCCGCAACAACCCc -3'
miRNA:   3'- agUGGUGACggCuGGUGUUGUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 59829 0.73 0.423455
Target:  5'- aCAUCGCUGCCGACC-CAgguuccgaguguugGCAGgCCGc -3'
miRNA:   3'- aGUGGUGACGGCUGGuGU--------------UGUUgGGC- -5'
18465 3' -54.8 NC_004681.1 + 65187 0.73 0.445174
Target:  5'- aUCAUUGCcagGCCGACCucgGCGACcACCCGa -3'
miRNA:   3'- -AGUGGUGa--CGGCUGG---UGUUGuUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 69957 0.72 0.45481
Target:  5'- cUCugUAUUGCCG-CUAcCGACAGCCCa -3'
miRNA:   3'- -AGugGUGACGGCuGGU-GUUGUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 3919 0.72 0.468487
Target:  5'- cUACCACUGCCGGuaACGACAccgagggcuucgcugGCCUGa -3'
miRNA:   3'- aGUGGUGACGGCUggUGUUGU---------------UGGGC- -5'
18465 3' -54.8 NC_004681.1 + 27859 0.72 0.474413
Target:  5'- cCGCCGCUGCCG-CCGCuGCcGCgCGu -3'
miRNA:   3'- aGUGGUGACGGCuGGUGuUGuUGgGC- -5'
18465 3' -54.8 NC_004681.1 + 39451 0.72 0.49443
Target:  5'- cCcCCAg-GCCGAuCCACAGCGGCCCc -3'
miRNA:   3'- aGuGGUgaCGGCU-GGUGUUGUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 34571 0.72 0.49443
Target:  5'- cCACCGCUGCUucguGCCACGGCAGgUCa -3'
miRNA:   3'- aGUGGUGACGGc---UGGUGUUGUUgGGc -5'
18465 3' -54.8 NC_004681.1 + 40476 0.72 0.504582
Target:  5'- aCGCCGCgGCCGacgccGCCACGAUGuagcaaucguGCCCGa -3'
miRNA:   3'- aGUGGUGaCGGC-----UGGUGUUGU----------UGGGC- -5'
18465 3' -54.8 NC_004681.1 + 37682 0.71 0.514823
Target:  5'- aCGCCucguACgugGCCGAUCACcACAGCUCGa -3'
miRNA:   3'- aGUGG----UGa--CGGCUGGUGuUGUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 25081 0.71 0.514823
Target:  5'- aCGCCugUGCCG-CCAgAGCc-CCCGu -3'
miRNA:   3'- aGUGGugACGGCuGGUgUUGuuGGGC- -5'
18465 3' -54.8 NC_004681.1 + 60593 0.71 0.535549
Target:  5'- cCGCCAUUGCCG-CCACuaau-CCCGc -3'
miRNA:   3'- aGUGGUGACGGCuGGUGuuguuGGGC- -5'
18465 3' -54.8 NC_004681.1 + 24825 0.71 0.535549
Target:  5'- gUUGCCGgUGUCGACUGCGAUgccGACCCa -3'
miRNA:   3'- -AGUGGUgACGGCUGGUGUUG---UUGGGc -5'
18465 3' -54.8 NC_004681.1 + 34115 0.71 0.546022
Target:  5'- gUCuCCGCaGUCGACCACGACGACg-- -3'
miRNA:   3'- -AGuGGUGaCGGCUGGUGUUGUUGggc -5'
18465 3' -54.8 NC_004681.1 + 56982 0.71 0.546022
Target:  5'- gCGCUAC-GCCGACCACuACGACaaGa -3'
miRNA:   3'- aGUGGUGaCGGCUGGUGuUGUUGggC- -5'
18465 3' -54.8 NC_004681.1 + 17986 0.71 0.55656
Target:  5'- -gGCCACUcccGCUGAUCACGcACAcCCCGg -3'
miRNA:   3'- agUGGUGA---CGGCUGGUGU-UGUuGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.