miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18465 3' -54.8 NC_004681.1 + 12996 0.66 0.824875
Target:  5'- aCACCGCUGgC-ACCGCgGACGACgUGg -3'
miRNA:   3'- aGUGGUGACgGcUGGUG-UUGUUGgGC- -5'
18465 3' -54.8 NC_004681.1 + 48335 0.66 0.815837
Target:  5'- gUCGCCAUgaaguacGCCGAagaCAagcgaGACGACCUGg -3'
miRNA:   3'- -AGUGGUGa------CGGCUg--GUg----UUGUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 50388 0.66 0.815837
Target:  5'- cUACCGCUaccaCGACUACGGCGACUgGu -3'
miRNA:   3'- aGUGGUGAcg--GCUGGUGUUGUUGGgC- -5'
18465 3' -54.8 NC_004681.1 + 70838 0.66 0.806615
Target:  5'- gUCuCCAC-GCucagCGGCCGCAGCAugCCc -3'
miRNA:   3'- -AGuGGUGaCG----GCUGGUGUUGUugGGc -5'
18465 3' -54.8 NC_004681.1 + 16220 0.66 0.806615
Target:  5'- -gGCCACgccuucgGCgGAaauCC-CAACGACCCGa -3'
miRNA:   3'- agUGGUGa------CGgCU---GGuGUUGUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 69268 0.66 0.806615
Target:  5'- aCACCugauggGCCGAUCugAugGACCgCGu -3'
miRNA:   3'- aGUGGuga---CGGCUGGugUugUUGG-GC- -5'
18465 3' -54.8 NC_004681.1 + 30779 0.66 0.805682
Target:  5'- gUCACCAacgGCCGcGCCAugacuguCGACAACUCc -3'
miRNA:   3'- -AGUGGUga-CGGC-UGGU-------GUUGUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 22782 0.66 0.800054
Target:  5'- cCACCACggggccugucguggGCCGcuacuacggcaucGCCGgGGCGACCCc -3'
miRNA:   3'- aGUGGUGa-------------CGGC-------------UGGUgUUGUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 10240 0.66 0.797216
Target:  5'- uUCGCUGCgGgUGACCuACAcccacggcuACAACCCGg -3'
miRNA:   3'- -AGUGGUGaCgGCUGG-UGU---------UGUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 17826 0.66 0.797216
Target:  5'- -gGCCGCgcaaggcaCCGGCCuCAcCAACCCGg -3'
miRNA:   3'- agUGGUGac------GGCUGGuGUuGUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 17956 0.66 0.797216
Target:  5'- -gGCgGCUccGUgGGCCACcGCAGCCCa -3'
miRNA:   3'- agUGgUGA--CGgCUGGUGuUGUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 46542 0.67 0.787653
Target:  5'- gUACCGgaGCaGGCCGCGGgAACCUGc -3'
miRNA:   3'- aGUGGUgaCGgCUGGUGUUgUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 19718 0.67 0.787653
Target:  5'- nCACC-CUcGCCGucaucgaccacGCCGCAGCGcGCCCa -3'
miRNA:   3'- aGUGGuGA-CGGC-----------UGGUGUUGU-UGGGc -5'
18465 3' -54.8 NC_004681.1 + 32295 0.67 0.787653
Target:  5'- cCACCAggUUGCCGAUgACcgu-GCCCGg -3'
miRNA:   3'- aGUGGU--GACGGCUGgUGuuguUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 21086 0.67 0.787653
Target:  5'- gCACCGC-GCUGaugaGCgACGGCAAUCCGc -3'
miRNA:   3'- aGUGGUGaCGGC----UGgUGUUGUUGGGC- -5'
18465 3' -54.8 NC_004681.1 + 2939 0.67 0.777934
Target:  5'- cCGCCACgcgcGCCGAguucaCCAgCGAgGACCCc -3'
miRNA:   3'- aGUGGUGa---CGGCU-----GGU-GUUgUUGGGc -5'
18465 3' -54.8 NC_004681.1 + 30246 0.67 0.777934
Target:  5'- -gGCCGC-GCCG-CCugAGCccGACCCa -3'
miRNA:   3'- agUGGUGaCGGCuGGugUUG--UUGGGc -5'
18465 3' -54.8 NC_004681.1 + 15145 0.67 0.77499
Target:  5'- aUCugCGCgagcauggUGCCGACCugcGCGACGAacgacuuggggucuCCCGa -3'
miRNA:   3'- -AGugGUG--------ACGGCUGG---UGUUGUU--------------GGGC- -5'
18465 3' -54.8 NC_004681.1 + 17681 0.67 0.768071
Target:  5'- aUACCACggcGCuUGGCCGCGGCGucacuGCCCc -3'
miRNA:   3'- aGUGGUGa--CG-GCUGGUGUUGU-----UGGGc -5'
18465 3' -54.8 NC_004681.1 + 49615 0.67 0.758072
Target:  5'- gCACCcUUGUCGACCAUGGCcugguugcgcagGACCCc -3'
miRNA:   3'- aGUGGuGACGGCUGGUGUUG------------UUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.